[Blends-commit] r2232 - projects/med/trunk/debian-med/tasks
Debian Pure Blends Subversion Commit
noreply at alioth.debian.org
Fri Jun 25 05:52:12 UTC 2010
Author: tille
Date: Fri Jun 25 05:52:10 2010
New Revision: 2232
URL: http://svn.debian.org/viewsvn/blends?rev=2232&view=rev
Log:
Removed additional information from now official packages
Modified:
projects/med/trunk/debian-med/tasks/bio
projects/med/trunk/debian-med/tasks/bio-dev
projects/med/trunk/debian-med/tasks/imaging
projects/med/trunk/debian-med/tasks/physics
Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jun 25 05:52:10 2010
@@ -329,6 +329,18 @@
Suggests: seqan-apps
+Depends: ncoils
+
+Depends: gentle
+
+Depends: gmap
+Published-Title: GMAP: a genomic mapping and alignment program for mRNA and EST sequences
+Published-Authors: Thomas D. Wu, Colin K. Watanabe
+Published-In: Bioinformatics
+Published-Year: 2005
+Published-URL: http://bioinformatics.oupjournals.org/cgi/content/full/21/9/1859
+
+
Depends: r-other-genabel
Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
Responsible: Steffen Moeller <steffen_moeller at gmx.de>
@@ -851,18 +863,6 @@
* E-Cell Modeling Environment (or E-Cell ME)
* E-Cell Analysis Toolkit.
-Depends: ncoils
-Homepage: http://www.russell.embl.de/cgi-bin/coils-svr.pl
-Responsible: Steffen Moeller <moeller at debian.org>
-WNPP: 299856
-License: GPL
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ciols/trunk/
-Pkg-Description: coiled coil secondary structure prediction
- The program predicts the coiled coil secondary structure predictions
- from protein sequences. The algorithm was published in
- Lupas, van Dyke & Stock, Predicting coiled coils from
- protein sequences Science, 252, 1162-1164, 1991.
-
Depends: haploview
Homepage: http://www.broad.mit.edu/mpg/haploview/
Responsible: Steffen Moeller <moeller at debian.org>
@@ -3183,19 +3183,6 @@
of new molecular-biology-related services by NCBI. It allows you to
read and write NCBI ASN.1 files, builds Cn3D, etc.
-Depends: gmap
-Homepage: http://research-pub.gene.com/gmap/
-License: free
-Responsible: Shaun Jackman <sjackman at gmail.com>
-Pkg-Description: A Genomic Mapping and Alignment Program for mRNA and EST Sequences
- GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and
- GSNAP: Genomic Short-read Nucleotide Alignment Program
-Published-Title: GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-Published-Authors: Thomas D. Wu, Colin K. Watanabe
-Published-In: Bioinformatics
-Published-Year: 2005
-Published-URL: http://bioinformatics.oupjournals.org/cgi/content/full/21/9/1859
-
Depends: treetime
Homepage: http://treetime.linhi.com/
License: GPL
@@ -3203,19 +3190,6 @@
TreeTime is controlled by input files in nexus format and does
bayesian sampling of phylogenetic trees from these data.
-Depends: gentle
-Homepage: http://gentle.magnusmanske.de
-License: GPL
-Responsible: Steffen Moeller <steffen_moeller at gmx.de>
-WNPP: 582959
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gentle/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gentle/trunk/
-Pkg-Description: suite to plan genetic cloning
- GENtle is a software for DNA and amino acid editing, database
- management, plasmid maps, restriction and ligation, alignments,
- sequencer data import, calculators, gel image display, PCR, and
- much more.
-
Depends: igv
Homepage: http://www.broadinstitute.org/igv
License: LGPL
Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/bio-dev&p2=projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Fri Jun 25 05:52:10 2010
@@ -74,6 +74,8 @@
Depends: seqan-dev
+Depends: libbio-mage-utils-perl
+
Depends: bioconductor
Homepage: http://www.bioconductor.org/
Responsible: Debian CRAN/BioConductor/Omegahat packaging team <pkg-bioc-devel at lists.alioth.debian.org>
@@ -171,22 +173,6 @@
investigate gene expression data from microarrays with the
statistical package R.
-Depends: libbio-mage-utils-perl
-Homepage: http://mged.sourceforge.net/
-License: MIT/X
-WNPP: 476202
-Responsible: Charles Plessy <plessy at debian.org>
-Pkg-URL: http://mentors.debian.net/debian/pool/main/l/libbio-mage-utils-perl/
-Pkg-Description: Extra modules for classes in the MAGE package: MAGE
- MAGE-TAB (MicroArray Gene Expression Tabular) format is a standard from the
- Microarray Gene Expression Data Society (MGED). This package contains Perl
- modules in the Bio::MAGE hierarchy to manipulate MIAME-compliant (Minimum
- Information About a Microarray Experiment) records of microarray ("DNA chips")
- experiments.
- .
- Bio-MAGE-Utils contains extra modules for handling MAGE XML and MGED ontology,
- as well as SQL utilities.
-
Depends: libsbml1
Homepage: http://www.sbml.org/
License: LGPL
Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/imaging&p2=projects/med/trunk/debian-med/tasks/imaging
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging (original)
+++ projects/med/trunk/debian-med/tasks/imaging Fri Jun 25 05:52:10 2010
@@ -98,6 +98,8 @@
Depends: pixelmed-java
+Depends: vmtk
+
Depends: bioimagesuite
Homepage: http://www.bioimagesuite.org/
License: GPL
@@ -681,7 +683,7 @@
Published-In: NeuroImage, 49: 2457-2466
Published-Year: 2010
Published-DOI: 10.1016/j.neuroimage.2009.09.062
-Institution: UCLA Center for Computation Biology
+X-Institution: UCLA Center for Computation Biology
Depends: itksnap
@@ -716,19 +718,6 @@
Published-Year: 2008
Published-DOI: 10.1371/journal.pbio.0060159
-Depends: vmtk
-Homepage: http://www.vmtk.org
-License: BSD, Modified MIT
-WNPP: 584222
-Responsible: Johannes Ring <johannr at simula.no>
-Vcs-Svn: svn://svn.debian.org/svn/debian-science/packages/vmtk/trunk
-Vcs-Browser: http://svn.debian.org/wsvn/debian-science/packages/vmtk/trunk/
-Pkg-Description: the Vascular Modeling Toolkit
- The Vascular Modeling Toolkit is a collection of libraries and tools
- for 3D reconstruction, geometric analysis, mesh generation and surface
- data analysis for image-based modeling of blood vessels.
-
-
Depends: sigviewer
License: GPL
Responsible: Yaroslav Halchenko <debian at onerussian.com>
Modified: projects/med/trunk/debian-med/tasks/physics
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/physics?rev=2232&view=diff&r1=2232&r2=2231&p1=projects/med/trunk/debian-med/tasks/physics&p2=projects/med/trunk/debian-med/tasks/physics
==============================================================================
--- projects/med/trunk/debian-med/tasks/physics (original)
+++ projects/med/trunk/debian-med/tasks/physics Fri Jun 25 05:52:10 2010
@@ -70,7 +70,7 @@
Published-Year: 2008
Published-URL: http://hci.tugraz.at/~schloegl/publications/Schloegl2007_BCI_Software.pdf
Published-DOI: 10.3389/neuro.11.003.2009
-Institution: Institute for Human-Computer Interfaces, University of Technology Graz
+X-Institution: Institute for Human-Computer Interfaces, University of Technology Graz
Depends: gate
Homepage: http://www.opengatecollaboration.org
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