[Blends-commit] r2240 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: tille
Date: Mon Jun 28 07:41:10 2010
New Revision: 2240
URL: http://svn.debian.org/viewsvn/blends?rev=2240&view=rev

Log:
Added denoiser as prospective package


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2240&view=diff&r1=2240&r2=2239&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Mon Jun 28 07:41:10 2010
@@ -3296,6 +3296,22 @@
  capabilities (such as true codon alignment) and the frequent addition
  of entirely new methods for the analysis of genomic data.
 
+Depends: denoiser
+WNPP: 587274
+Homepage:  http://www.microbio.me/denoiser/
+License: GPL
+Language: Haskell
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/denoiser/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/denoiser/trunk/
+Responsible: Steffen Moeller <steffen_moeller at gmx.de>
+Pkg-Description: Rapid denoising of pyrosequencing amplicon data
+ To denoise pyrosequencing amplicon data, the package exploits the
+ rank-abundance distribution.  PyroNoise uses an expectation maximization
+ (EM) algorithm to figure out the most likely sequence for every read. We,
+ instead, use a greedy scheme that can be seen as an approximation to
+ PyroNoise. According to several test data sets, the approximation gives
+ very similar results in a fraction of the time.
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html