[Blends-commit] r2733 - /projects/med/trunk/debian-med/tasks/bio
tille at users.alioth.debian.org
tille at users.alioth.debian.org
Tue Apr 5 11:52:33 UTC 2011
Author: tille
Date: Tue Apr 5 11:52:32 2011
New Revision: 2733
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2733
Log:
Added clarification of relation between ssaha2 and smalt
Modified:
projects/med/trunk/debian-med/tasks/bio
Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2733&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Apr 5 11:52:32 2011
@@ -862,7 +862,11 @@
.
Unfortunately the source of its successor ssaha2
http://www.sanger.ac.uk/Software/analysis/SSAHA2/
- does not seem to be available.
+ can not be relieased as Open Source because it contains
+ proprietary code.
+Remark: Successor for ssaha2 available: smalt
+ The program smalt is from the same author is according to its author
+ faster and more precise than ssaha2 (except for sequences > 2000bp)
Depends: ngila
Homepage: http://scit.us/projects/ngila/
@@ -3708,6 +3712,9 @@
.
A mode for the detection of split (chimeric) reads is provided.
Multi-threaded program execution is supported.
+Remark: This can be regarded as successor of ssaha2
+ This program is from the same author as ssaha2 and according to its author
+ faster and more precise than ssaha2 (except for sequences > 2000bp).
X-Comment: Not sure whether this can be distributed at all - asking
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