[Blends-commit] r2733 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Tue Apr  5 11:52:32 2011
New Revision: 2733

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2733
Log:
Added clarification of relation between ssaha2 and smalt

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2733&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Apr  5 11:52:32 2011
@@ -862,7 +862,11 @@
  .
  Unfortunately the source of its successor ssaha2
  http://www.sanger.ac.uk/Software/analysis/SSAHA2/
- does not seem to be available.
+ can not be relieased as Open Source because it contains
+ proprietary code.
+Remark: Successor for ssaha2 available: smalt
+ The program smalt is from the same author is according to its author
+ faster and more precise than ssaha2 (except for sequences > 2000bp)
 
 Depends: ngila
 Homepage: http://scit.us/projects/ngila/
@@ -3708,6 +3712,9 @@
  .
  A mode for the detection of split (chimeric) reads is provided.
  Multi-threaded program execution is supported. 
+Remark: This can be regarded as successor of ssaha2
+ This program is from the same author as ssaha2 and according to its author
+ faster and more precise than ssaha2 (except for sequences > 2000bp).
 
 
 X-Comment: Not sure whether this can be distributed at all - asking