[Blends-commit] r2750 - in /projects/med/trunk/debian-med/tasks: bio-phylogeny oncology

[tille at users.alioth.debian.org]

Author: tille
Date: Sun Apr 10 19:53:49 2011
New Revision: 2750

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2750
Log:
mrbayes in phylogenie; s/Prism/prism/

Modified:
    projects/med/trunk/debian-med/tasks/bio-phylogeny
    projects/med/trunk/debian-med/tasks/oncology

Modified: projects/med/trunk/debian-med/tasks/bio-phylogeny
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-phylogeny?rev=2750&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-phylogeny (original)
+++ projects/med/trunk/debian-med/tasks/bio-phylogeny Sun Apr 10 19:53:49 2011
@@ -297,28 +297,6 @@
 Published-PubMed: 17996036
 
 Depends: mrbayes
-Homepage: http://mrbayes.csit.fsu.edu/
-License: GPL
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mrbayes/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mrbayes/trunk/
-Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: Bayesian estimation of phylogeny
- MrBayes is a program for the Bayesian estimation of
- phylogeny. Bayesian inference of phylogeny is based upon a quantity
- called the posterior probability distribution of trees, which is the
- probability of a tree conditioned on the observations. The
- conditioning is accomplished using Bayes's theorem. The posterior
- probability distribution of trees is impossible to calculate
- analytically; instead, MrBayes uses a simulation technique called
- Markov chain Monte Carlo (or MCMC) to approximate the posterior
- probabilities of trees.
- .
- The program takes as input a character matrix in a NEXUS file
- format. The output is several files with the parameters that were
- sampled by the MCMC algorithm. MrBayes can summarize the information
- in these files for the user. The program features include:
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Depends: jstreeview
 Homepage: http://www.sanger.ac.uk/Users/lh3/treeview.shtml

Modified: projects/med/trunk/debian-med/tasks/oncology
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/oncology?rev=2750&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/oncology (original)
+++ projects/med/trunk/debian-med/tasks/oncology Sun Apr 10 19:53:49 2011
@@ -6,7 +6,7 @@
  into Debian at a later point in time provided somebody is willing to
  take over the packaging work.
 
-Depends: Prism
+Depends: prism
 Homepage: http://www.radonc.washington.edu/research/cancer-informatics/prism/
 License: Lisp LGPL
 Pkg-Description: radiation therapy planning