[Blends-commit] r2756 - /projects/med/trunk/debian-med/tasks/bio

Fri Apr 15 19:46:56 UTC 2011

Author: tille
Date: Fri Apr 15 19:46:56 2011
New Revision: 2756

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2756
Log:
Added maker2

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2756&op=diff
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Apr 15 19:46:56 2011
@@ -3710,6 +3710,26 @@
  numerous modules, to analyze, visualize and manipulate assemblies. New
  and improved algorithms are becoming available on a regular basis. 
 
+Depends: maker2
+Homepage: http://www.yandell-lab.org/software/maker.html
+License: GPL / Artistic
+Pkg-Description: annotate genomes and create genome databases
+ MAKER is a portable and easily configurable genome annotation pipeline.
+ It's purpose is to allow smaller eukaryotic and prokaryotic genome
+ projects to independently annotate their genomes and to create genome
+ databases. MAKER identifies repeats, aligns ESTs and proteins to a
+ genome, produces ab-initio gene predictions and automatically
+ synthesizes these data into gene annotations having evidence-based
+ quality values. MAKER is also easily trainable: outputs of preliminary
+ runs can be used to automatically retrain its gene prediction algorithm,
+ producing higher quality gene-models on seusequent runs. MAKER's inputs
+ are minimal and its ouputs can be directly loaded into a GMOD database.
+ They can also be viewed in the Apollo genome browser; this feature of
+ MAKER provides an easy means to annotate, view and edit individual
+ contigs and BACs without the overhead of a database. MAKER should prove
+ especially useful for emerging model organism projects with minimal
+ bioinformatics expertise and computer resources
+
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html
 Comment: There is a Gentoo page featuring some projects we do not have mentioned here:


