[Blends-commit] r2763 - /projects/med/trunk/debian-med/tasks/bio

[project2501a-guest at users.alioth.debian.org]

Author: project2501a-guest
Date: Sat Apr 23 18:42:58 2011
New Revision: 2763

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2763
Log:
ADD: RepeatMasker (http://www.repeatmasker.org/)

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2763&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Apr 23 18:42:58 2011
@@ -3724,3 +3724,15 @@
  Parser.
  Reference
  Korf I. Gene finding in novel Genomes. BMC Bioinformatics 2004, 5:59
+
+Depends: RepeatMasker
+Homepage: http://www.repeatmasker.org/
+License: Open Software License v. 2.1
+ RepeatMasker is a program that screens DNA sequences for interspersed 
+ repeats and low complexity DNA sequences. The output of the program is a detailed 
+ annotation of the repeats that are present in the query sequence as well as a 
+ modified version of the query sequence in which all the annotated repeats have 
+ been masked (default: replaced by Ns). On average, almost 50% of a human genomic 
+ DNA sequence currently will be masked by the program. Sequence comparisons in 
+ RepeatMasker are performed by one of several popular search engines including, 
+ cross_match, ABBlast/WUBlast, RMBlast and Decypher.