[Blends-commit] r2766 - /projects/med/trunk/debian-med/tasks/bio

[project2501a-guest at users.alioth.debian.org]

Author: project2501a-guest
Date: Sat Apr 23 19:32:32 2011
New Revision: 2766

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2766
Log:
ADD: mugsy

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2766&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Apr 23 19:32:32 2011
@@ -3786,3 +3786,13 @@
  prediction. The MediGRID requires an instant easy registration by email 
  for first-time users.
  
+Depends: Mugsy
+Homepage: http://mugsy.sourceforge.net/
+License: Artistic License 2.0
+ Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise 
+ alignment, a custom graph based segmentation procedure for identifying 
+ collinear regions, and the segment-based progressive multiple alignment 
+ strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form 
+ of multi-FASTA files and does not require a reference genome. 
+ To cite Mugsy, use:
+ Angiuoli SV, Salzberg SL. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics. 2011 27(3):334-42