[Blends-commit] r2774 - /projects/med/trunk/debian-med/tasks/bio

[project2501a-guest at users.alioth.debian.org]

Author: project2501a-guest
Date: Sat Apr 23 20:06:33 2011
New Revision: 2774

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2774
Log:
ADD: GBrowse_syn ( for completness sake)

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2774&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Apr 23 20:06:33 2011
@@ -3795,7 +3795,8 @@
  strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form 
  of multi-FASTA files and does not require a reference genome. 
  To cite Mugsy, use:
- Angiuoli SV, Salzberg SL. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics. 2011 27(3):334-42
+ Angiuoli SV, Salzberg SL. Mugsy: fast multiple alignment of 
+  closely related whole genomes. Bioinformatics. 2011 27(3):334-42
 
 Depends: Apollo
 Homepage: http://gmod.org/wiki/Apollo
@@ -3845,3 +3846,14 @@
 License: Not specified
  CMap is a web-based tool that allows users to view comparisons of genetic and
  physical maps. The package also includes tools for curating map data.
+
+Depends: GBrowse_syn
+Homepage: http://gmod.org/wiki/GBrowse_syn
+License: Not specified
+ GBrowse_syn, or the Generic Synteny Browser, is a GBrowse-based synteny 
+ browser designed to display multiple genomes, with a central reference 
+ species compared to two or more additional species.  It can be used to 
+ view multiple sequence alignment data, synteny or co-linearity data 
+ from other sources against genome annotations provided by GBrowse. 
+ GBrowse_syn is included with the standard GBrowse package (version 1.69 and later).
+  Working examples can be seen at TAIR and WormBase.