[Blends-commit] r2783 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Apr 28 07:01:01 2011
New Revision: 2783

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2783
Log:
Biomaj now official package, more detailed information for ampliconnoise

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2783&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Apr 28 07:01:01 2011
@@ -266,6 +266,8 @@
 Published-Year: 2000
 
 X-End-Category: Tools for the molecular biologist.
+
+Depends: biomaj
 
 Suggests:    mozilla-biofox
 Why:         Tools for the molecular biologist. Because of the dependency from firefox we only suggest this package to not bloat the system of the user.
@@ -3234,26 +3236,6 @@
 Published-Year: 2006
 
 Depends: biomaj
-Homepage: http://biomaj.genouest.org
-License: CeCILL, french equivalent of GNU GPL
-WNPP: 609038
-Responsible: Olivier Sallou <olivier.sallou at irisa.fr>
-Language: Java
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biomaj/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/?rev=0&sc=0
-Pkg-Description: Biological banks updater
- BioMAJ downloads remote biological data banks, check their status and
- apply transformation workflows, with consistent state, to provide
- ready-to-use data to biologists and bioinformaticians.
- For example, it can transform original fasta files to blast indexes. It
- is very flexible and post-processes can be extended very easily.
- .
- BioMAJ includes some post-processes and bank properties (genbank, uniprot
- ...).
- .
- A web administration interface is provided.
-Remark: Similar to getData
- Steffen Möller stated that the project is similar to http://wiki.debian.org/getData
 
 Depends: sra-sdk
 Homepage: http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software
@@ -3482,11 +3464,16 @@
 Depends: ampliconnoise
 Homepage: http://code.google.com/p/ampliconnoise/
 License: LGPL
-Pkg-Description: removal of noise from 454 sequenced PCR amplicons
+Pkg-Description: Programs for the removal of noise from 454 sequenced PCR amplicons
  AmpliconNoise is a collection of programs for the removal of noise from 454
- sequenced PCR amplicons. It involves two steps the removal of noise from the
- sequencing itself and the removal of PCR point errors. This project also includes
- the Perseus algorithm for chimera removal.
+ sequenced PCR amplicons. It involves two denoising steps, the removal of noise
+ from the sequencing itself and the removal of PCR point errors.
+ This project also includes the Perseus algorithm for chimera removal.
+Published-Authors: Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh
+Published-Title: Removing Noise From Pyrosequenced Amplicons
+Published-In: BMC Bioinformatics
+Published-Year: 2001
+Published-DOI: 12:38doi:10.1186/1471-2105-12-38
 Remark: High relevance for NGS
 
 Depends: forge