[Blends-commit] r2785 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Apr 28 17:42:15 2011
New Revision: 2785

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2785
Log:
Added ncbi-blast-plus

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2785&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Apr 28 17:42:15 2011
@@ -3695,15 +3695,6 @@
  especially useful for emerging model organism projects with minimal
  bioinformatics expertise and computer resources
 
-Comment: Several related R packages are listed at CRAN:
-         http://cran.r-project.org/web/views/Genetics.html
-Comment: There is a Gentoo page featuring some projects we do not have mentioned here:
-         http://gentoo-overlays.zugaina.org/dberkholz/sci-biology.html.en
-Comment: Phylogenie centric Ubuntu derivative with some additional derivatives
-	 http://www.eve.ucdavis.edu/rcthomson/phylis/
-Comment: SEQanswers: The next generation sequencing community
-	 http://seqanswers.com/forums/showthread.php?t=43
-
 Depends: snap
 Homepage: http://homepage.mac.com/iankorf/
 License: GPL2
@@ -3882,3 +3873,30 @@
 Pkg-Description: family of gene prediction programs
  A family of gene prediction programs developed at Georgia Institute of 
  Technology, Atlanta, Georgia, USA.
+
+Depends: ncbi-blast-plus
+License: BSD
+Homepage: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ncbi-blast-plus/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ncbi-blast-plus/?rev=0
+Pkg-Description: NCBI Blast+ is new blast evolution
+ The Basic Local Alignment Search Tool (BLAST) is the most widely
+  used sequence similarity tool. There are versions of BLAST that
+ compare protein queries to protein databases, nucleotide queries
+ to nucleotide databases, as well as versions that translate nucleotide
+ queries or databases in all six frames and compare to protein databases or queries.
+ PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
+ with a protein query, and then uses that PSSM to perform further searches.
+ It is also possible to compare a protein or nucleotide query to a database of PSSM’s.
+ The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service.
+
+
+Comment: Several related R packages are listed at CRAN:
+         http://cran.r-project.org/web/views/Genetics.html
+Comment: There is a Gentoo page featuring some projects we do not have mentioned here:
+         http://gentoo-overlays.zugaina.org/dberkholz/sci-biology.html.en
+Comment: Phylogenie centric Ubuntu derivative with some additional derivatives
+	 http://www.eve.ucdavis.edu/rcthomson/phylis/
+Comment: SEQanswers: The next generation sequencing community
+	 http://seqanswers.com/forums/showthread.php?t=43
+