[Blends-commit] r2917 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Sat Aug  6 21:34:39 2011
New Revision: 2917

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2917
Log:
Removed extra information of just uploaded packages, mention all binaries of RostLab profnet

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2917&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Aug  6 21:34:39 2011
@@ -3022,6 +3022,10 @@
 
 Depends: abacas
 
+Depends: profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net
+X-Remark: The profnet homepage contains an image of a complete Debian system.  The Debian Med
+          team tries to support the authors by providing binary packages inside Debian.
+
 Depends: denoiser
 WNPP: 587274
 Homepage:  http://www.microbio.me/denoiser/
@@ -3095,20 +3099,6 @@
  will remain supported wherever possible in order to preserve
  operation of any existing scripts.
 
-Depends: blast+
-Homepage: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
-License: same as blast2
-Enhances: t-coffee
-Pkg-Description: new suite of BLAST tools
- BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++
- Toolkit. The BLAST+ applications have a number of performance and
- feature improvements over the legacy BLAST applications. For details,
- please see the BLAST+ user manual and the article in BMC Bioinformatics
- (PubMed link).
- .
- Please note that binaries and options were changed.
-Remark: Precondition for T-Coffee
- see http://wiki.debian.org/DebianMed/TCoffee
 
 Depends: pcma
 Homepage: ftp://iole.swmed.edu/pub/PCMA/
@@ -3726,24 +3716,6 @@
  For a full feature list you might like to visit
  http://code.google.com/p/rdkit/wiki/FeatureOverview
 
-Depends: profnet-bval
-Homepage: http://www.predictprotein.org/
-License: GPL2+
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/profnet/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/profnet/trunk/
-Pkg-Description: neural network architecture for profbval
- PredictProtein integrates feature prediction for secondary structure,
- solvent accessibility, transmembrane helices, globular regions,
- coiled-coil regions ,structural switch regions, B-values, disorder
- regions, intra-residue contacts, protein-protein and protein-DNA binding
- sites, sub-cellular localization, domain boundaries, beta-barrels,
- cysteine bonds, metal binding sites and disulphide bridges.
-Comment: The source package splits up in more binary packages.  Profnet-bval
-         is only one example of them.  The final tasks file should mention
-         these all once the package is officially included.
-Remark: The profnet homepage contains an image of a complete Debian system.  The Debian Med
-        team tries to support the authors by providing binary packages inside Debian.
-
 Depends: abyss
 Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss
 WNPP: 631534