[Blends-commit] r2928 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Aug 11 14:19:42 2011
New Revision: 2928

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2928
Log:
Added anfo

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2928&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Aug 11 14:19:42 2011
@@ -3830,6 +3830,18 @@
  in the formation of bridges are paired by a Recursive Neural Network
  to obtain a connectivity pattern.
 
+Depends: anfo
+Homepage: http://bioinf.eva.mpg.de/anfo/
+License: GPLv3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/anfo/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/anfo/trunk/
+Pkg-Description: Short Read Aligner/Mapper from MPG
+ Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes
+ more after BLAST/BLAT. It's most useful for the alignment of sequencing reads
+ where the DNA sequence is somehow modified (think ancient DNA or bisulphite
+ treatment) and/or there is more divergence between sample and reference than
+ what fast mappers will handle gracefully (say the reference genome is missing
+ and a related species is used instead).
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html