[Blends-commit] r3080 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Dec 15 08:28:56 2011
New Revision: 3080

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3080
Log:
Added clustalo, updated info for cd-hit

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3080&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Dec 15 08:28:56 2011
@@ -171,8 +171,10 @@
 Suggests:    emboss-explorer
 Why:         The EMBOSS sequence analysis suite and its galaxy.
 
-Depends:     arb, clustalx
+Depends:     arb
 Why:         Sequence alignments and related programs (Non-free, thus only suggested).
+
+Depends: clustalx, clustalo
 
 Depends: clustalw
 Published-Authors: M. Larkin, et al.
@@ -2101,9 +2103,11 @@
 
 Depends: cd-hit
 Homepage: http://www.bioinformatics.org/cd-hit/
-License: to be clarified
-Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+License: GPLv2
+WNPP: 652074
+Responsible: Andreas Tille <tille at debian.org>
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/cd-hit/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/cd-hit/trunk/
 Pkg-Description: suite of programs designed to quickly group sequences.
  CD-HIT stands for Cluster Database at High Identity with
  Tolerance. The program (cd-hit) takes a fasta format sequence
@@ -2126,7 +2130,6 @@
  With recent developments, cd-hit package offers new programs for DNA
  sequence clustering and comparing two databases. It also has lots of
  new options for clustering control.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Comment: BioLinux contains a clcworkbench package which is available
  at http://www.clcbio.com/index.php?id=28 but this seems to be only