[Blends-commit] r3083 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Dec 15 16:45:03 2011
New Revision: 3083

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3083
Log:
Added tophat

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3083&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Dec 15 16:45:03 2011
@@ -3836,6 +3836,21 @@
  nice features, from displaying through animation to analysing.
  It can be scripted, clustered, and runs on all common OS.
 
+Depends: tophat
+License: Artistic
+Homepage: http://tophat.cbcb.umd.edu/
+Vcs-Git: git://git.debian.org/debian-med/tophat.git
+Vcs-Browser: http://git.debian.org/?p=debian-med/tophat.git;a=summary
+Pkg-Description: TopHat is a fast splice junction mapper for RNA-Seq reads
+ It aligns RNA-Seq reads to mammalian-sized genomes using the ultra
+ high-throughput short read aligner Bowtie, and then analyzes the
+ mapping results to identify splice junctions between exons.
+ TopHat is a collaborative effort between the University of Maryland
+ Center for Bioinformatics and Computational Biology and the
+ University of California, Berkeley Departments of Mathematics and
+ Molecular and Cell Biology.
+
+
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html
 Comment: There is a Gentoo page featuring some projects we do not have mentioned here: