[Blends-commit] r2658 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Mon Feb  7 15:17:28 2011
New Revision: 2658

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2658
Log:
Removed extra information from tm-align which is now in NEW; Added remark to blast+ that it is a precondition for t-coffee

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2658&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Mon Feb  7 15:17:28 2011
@@ -870,18 +870,6 @@
  23(11):1427-1428; doi:10.1093/bioinformatics/btm095
 
 Depends: tm-align
-Homepage: http://zhang.bioinformatics.ku.edu/TM-align/
-License: free to change and redistribute
-Responsible: Steffen Moeller <moeller at debian.org>
-WNPP: 447505
-Pkg-Description: structural protein alignment
- TM-align is a structural alignment program for comparing two proteins
- whose sequences can be different. TM-align will first find the best
- equivalent residues of two proteins based on the structure similarity
- and then output a TM-score.
- .
- TM-align performs a structural alignment of protein sequences. It is
- said to be 10 times faster than DALI and no worse in accuracy.
 
 Depends: dazzle
 Homepage: http://www.biojava.org/dazzle
@@ -3392,7 +3380,7 @@
  (PubMed link).
  .
  Please note that binaries and options were changed.
-
+Remark: Precondition for T-Coffee (see http://wiki.debian.org/DebianMed/TCoffee)
 
 
 Comment: Several related R packages are listed at CRAN: