[Blends-commit] r2664 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Feb 11 12:54:39 2011
New Revision: 2664

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2664
Log:
Added clonalorigin

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2664&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Feb 11 12:54:39 2011
@@ -3453,6 +3453,21 @@
 Remark: Precondition for T-Coffee
  see http://wiki.debian.org/DebianMed/TCoffee
 
+Depends: clonalorigin
+Homepage: http://code.google.com/p/clonalorigin/
+License: GPLv3
+Pkg-Description: inference of homologous recombination in bacteria using whole genome sequences
+ Bacteria, unlike us, can reproduce on their own. They do however have
+ mechanisms that transfer DNA between organisms, a process more formally
+ known as recombination. The mechanisms by which recombination takes
+ place have been studied extensively in the laboratory but much remains
+ to be understood concerning how, when and where recombination takes
+ place within natural populations of bacteria and how it helps them to
+ adapt to new environments. ClonalOrigin performs a comparative analysis
+ of the sequences of a sample of bacterial genomes in order to
+ reconstruct the recombination events that have taken place in their
+ ancestry.
+Published-URL: http://www.genetics.org/cgi/content/abstract/genetics.110.120121v1
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html