[Blends-commit] r2672 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Tue Feb 15 15:56:33 2011
New Revision: 2672

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2672
Log:
Added zodiac

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2672&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Feb 15 15:56:33 2011
@@ -3180,7 +3180,7 @@
  differential expression and regulation in RNA-Seq samples. It accepts aligned
  RNA-Seq reads and assembles the alignments into a parsimonious set of
  transcripts. Cufflinks then estimates the relative abundances of these
- transcripts based on how many reads support each one. 
+ transcripts based on how many reads support each one.
 Published-Authors: Trapnell C, Williams BA, Pertea G, Mortazavi AM, Kwan G, van Baren MJ, Salzberg SL, Wold B, Pachter L.
 Published-Title: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
 Published-In: Nature Biotechnology
@@ -3404,7 +3404,7 @@
  profile–profile comparison method that is a generalization of the
  PSI-BLAST approach to profile–sequence comparison. PCMA balances speed
  and accuracy in a flexible way and is suitable for aligning large
- numbers of sequences. 
+ numbers of sequences.
 Published-URL: http://bioinformatics.oxfordjournals.org/content/19/3/427.short
 Remark: Precondition for T-Coffee
  see http://wiki.debian.org/DebianMed/TCoffee
@@ -3425,7 +3425,7 @@
  estimations of homology. This is made possible by the sequence annealing
  technique for constructing a multiple alignment from pairwise
  comparisons, developed by Ariel Schwartz in  "Posterior Decoding Methods
- for Optimization and Control of Multiple Alignments." 
+ for Optimization and Control of Multiple Alignments."
 Remark: Precondition for T-Coffee
  see http://wiki.debian.org/DebianMed/TCoffee
 
@@ -3512,6 +3512,18 @@
  orientation, percent identity, coverage and overlap with other contigs
  can also be visualized by loading the outputted feature file on ACT.
 
+Depends: zodiac
+Homepage: http://www.zeden.org/
+License: GPL
+WNPP: 613528
+Language: C, C++
+Responsible: Alex Mestiashvili <alexander.mestiashvili at biotec.tu-dresden.de>
+Pkg-Description: Zeden's Organise DIsplay And Compute
+ Zodiac is a molecular modelling suite for computation, analysis and
+ display of molecular data. It features state-of-the-art tools for
+ managing molecular databases, run molecular docking experiments, compute
+ raytraced images and much more.
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html