[Blends-commit] r2690 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Feb 25 13:38:47 2011
New Revision: 2690

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2690
Log:
Added ampliconnoise

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2690&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Feb 25 13:38:47 2011
@@ -3235,6 +3235,7 @@
  a cluster environment. QIIME is built in Python using the open-source
  PyCogent toolkit. It makes extensive use of unit tests, and is highly
  modular to facilitate custom analyses.
+Remark: Highly important for NGS
 
 Depends: denoiser
 WNPP: 587274
@@ -3569,6 +3570,16 @@
 Suggests: maude
 WNPP: 611927
 
+Depends: ampliconnoise
+Homepage: http://code.google.com/p/ampliconnoise/
+License: LGPL
+Pkg-Description: removal of noise from 454 sequenced PCR amplicons
+ AmpliconNoise is a collection of programs for the removal of noise from 454
+ sequenced PCR amplicons. It involves two steps the removal of noise from the
+ sequencing itself and the removal of PCR point errors. This project also includes
+ the Perseus algorithm for chimera removal. 
+Remark: High relevance for NGS
+
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html
 Comment: There is a Gentoo page featuring some projects we do not have mentioned here: