[Blends-commit] r2575 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Jan  7 07:42:03 2011
New Revision: 2575

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2575
Log:
Added BioMAJ

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2575&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jan  7 07:42:03 2011
@@ -3364,6 +3364,25 @@
  chromosomal coordinates. Fast data retrieval also works over network if an URI
  is given as a file name.
 
+Depends: biomaj
+Homepage: http://biomaj.genouest.org
+License: CeCILL, french equivalent of GNU GPL
+WNPP: 609038
+Responsible: Olivier Sallou <olivier.sallou at irisa.fr>
+Language: Java
+Pkg-Description: Biological banks updater
+ BioMAJ downloads remote biological data banks, check their status and 
+ apply transformation workflows, with consistent state, to provide 
+ ready-to-use data to biologists and bioinformaticians.
+ For example, it can transform original fasta files to blast indexes. It 
+ is very flexible and post-processes can be extended very easily.
+ .
+ BioMAJ includes some post-processes and bank properties (genbank, uniprot 
+ ...).
+ .
+ A web administration interface is provided.
+Remark: Similar to getData
+ Steffen Möller stated that the project is similar to http://wiki.debian.org/getData
 
 
 Comment: Several related R packages are listed at CRAN: