[Blends-commit] r2579 - in /projects/med/trunk/debian-med/tasks: bio imaging imaging-dev

Sat Jan 8 22:28:14 UTC 2011

Author: tille
Date: Sat Jan  8 22:28:14 2011
New Revision: 2579

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2579
Log:
Removed extra information of now official packages

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/imaging
    projects/med/trunk/debian-med/tasks/imaging-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2579&op=diff
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Jan  8 22:28:14 2011
@@ -377,6 +377,8 @@
 Depends: acedb-other-dotter, acedb-other-belvu, acedb-other
 
 Depends: python-cogent
+
+Depends: paml
 
 Depends: r-other-genabel
 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
@@ -2669,23 +2671,6 @@
   Genetics doi:10.1534/genetics.105.044917.
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
-Depends: paml
-Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html
-License: academics only (non-free)
-Responsible: Steffen Moeller <steffen_moeller at gmx.de>
-WNPP: 595958
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: Phylogenetic Analysis by Maximum Likelihood
- PAML is a package of programs for phylogenetic analyses of DNA or
- protein sequences using maximum likelihood. It is maintained and
- distributed for academic use free of charge by Ziheng Yang. ANSI C
- source codes are distributed for UNIX/Linux/Mac OSX, and executables
- are provided for MS Windows. PAML is not good for tree making. It may
- be used to estimate parameters and test hypotheses to study the
- evolutionary process, when you have reconstructed trees using other
- programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-
 Depends: partigene
 Homepage: http://www.nematodes.org/bioinformatics/PartiGene/
 License: GPL

Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=2579&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging (original)
+++ projects/med/trunk/debian-med/tasks/imaging Sat Jan  8 22:28:14 2011
@@ -71,23 +71,7 @@
 Published-URL: https://github.com/satra/ohbm2010/raw/master/NIPYPE/POSTER/poster_nipype.pdf
 Published-Year: 2010
 
- ; Added by blends-inject 0.0.2. [Please note here if modified manually]
 Recommends: python-nitime
-Homepage: http://nipy.org/nitime
-Language: Python
-WNPP: 600714
-Responsible: NeuroDebian Team <team at neuro.debian.net>
-License: BSD-3
-Vcs-Browser: http://github.com/yarikoptic/nitime
-Vcs-Git: git://github.com/yarikoptic/nitime.git
-Pkg-Description: timeseries analysis for neuroscience data (nitime)
- Nitime is a Python module for time-series analysis of data from
- neuroscience experiments.  It contains a core of numerical algorithms
- for time-series analysis both in the time and spectral domains, a set
- of container objects to represent time-series, and auxiliary objects
- that expose a high level interface to the numerical machinery and
- make common analysis tasks easy to express with compact and
- semantically clear code.
 Why: Although listed in -dev task, it also has a strong focus on interactive
  data analysis.
 
@@ -842,19 +826,7 @@
 Published-In: Neuroinformatics 8, 5-17
 Published-Year: 2010
 
- ; Added by blends-inject 0.0.5. [Please note here if modified manually]
 Depends: openmeeg-tools
-Pkg-Description: library for solving EEG and MEG forward and inverse problems
- OpenMEEG consists of state-of-the art solvers for forward problems in
- the field of MEG and EEG.
- .
- Solvers are based on the symmetric Boundary Element method [Kybic et
- al, 2005], providing excellent accuracy, particularly for superficial
- cortical sources. OpenMEEG can compute four types of lead fields
- (EEG, MEG, Internal Potential and Electrical Impedence Tomography).
- .
- It can be used from the command line, from Python and from Matlab via
- Fieldtrip.
 Published-Authors: Alexandre Gramfort, ThÃ©odore Papadopoulo, Emmanuel Olivi, Maureen Clerc
 Published-In: BioMedical Engineering OnLine 45:9
 Published-Title: OpenMEEG: opensource software for quasistatic bioelectromagnetics

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging-dev?rev=2579&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev (original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev Sat Jan  8 22:28:14 2011
@@ -140,19 +140,7 @@
 License: MIT
 Pkg-URL: http://neuro.debian.net/pkgs/python-dicom.html
 
- ; Added by blends-inject 0.0.5. [Please note here if modified manually]
 Depends: libopenmeeg-dev
-Pkg-Description: library for solving EEG and MEG forward and inverse problems
- OpenMEEG consists of state-of-the art solvers for forward problems in
- the field of MEG and EEG.
- .
- Solvers are based on the symmetric Boundary Element method [Kybic et
- al, 2005], providing excellent accuracy, particularly for superficial
- cortical sources. OpenMEEG can compute four types of lead fields
- (EEG, MEG, Internal Potential and Electrical Impedence Tomography).
- .
- It can be used from the command line, from Python and from Matlab via
- Fieldtrip.
 Published-Authors: Alexandre Gramfort, ThÃ©odore Papadopoulo, Emmanuel Olivi, Maureen Clerc
 Published-In: BioMedical Engineering OnLine 45:9
 Published-Title: OpenMEEG: opensource software for quasistatic bioelectromagnetics


