[Blends-commit] r2883 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Jul  7 12:31:42 2011
New Revision: 2883

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2883
Log:
Added python-reaper

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2883&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Jul  7 12:31:42 2011
@@ -3802,6 +3802,25 @@
  general public to educate itself and/or actively join in to
  help the world .... just a bit.
 
+Depends: python-reaper
+Homepage: http://qtlreaper.sf.net
+License: GPL-2+
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/qtlreaper/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/qtlreaper/trunk/
+Pkg-Description: QTL analysis for expression data
+ QTL Reaper is software, written in C and compiled as a Python module, for
+ rapidly scanning microarray expression data for QTLs. It is essentially
+ the batch-oriented version of WebQTL. It requires, as input, expression
+ data from members of a set of recombinant inbred lines and genotype
+ information for the same lines. It searches for an association between
+ each expression trait and all genotypes and evaluates that association
+ by a permutation test. For the permutation test, it performs only as
+ many permutations as are necessary to define the empirical P-value to a
+ reasonable precision. It also performs bootstrap resampling to estimate
+ the confidence region for the location of a putative QTL.
+ .
+ The reaper module is used underneath the http://genenetwork.org site.
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html