[Blends-commit] r2901 - in /projects/med/trunk/debian-med: debian-med-tasks.desc debian/control

[tille at users.alioth.debian.org]

Author: tille
Date: Mon Jul 18 08:50:09 2011
New Revision: 2901

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2901
Log:
Autobuild Dependencies against testing (via 'make dist')

Modified:
    projects/med/trunk/debian-med/debian-med-tasks.desc
    projects/med/trunk/debian-med/debian/control

Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=2901&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian-med-tasks.desc (original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc Mon Jul 18 08:50:09 2011
@@ -106,7 +106,6 @@
  mrbayes
  squizz
  clonalframe
- ballview
  raxml
  mlv-smile
  tm-align
@@ -211,16 +210,6 @@
  raster3d
  python-cogent
 
-Task: med-cms
-Section: debian-med
-Description: Debian Med content management systems
- Here you can find software that is useful to build a
- content management system for medical care.
-Relevance: 10
-Key: 
- med-cms
-Packages: list
-
 Task: med-data
 Section: debian-med
 Description: Debian Med drug databases
@@ -232,7 +221,6 @@
  med-data
 Packages: list
  freediams
- python-hl7
 
 Task: med-epi
 Section: debian-med
@@ -290,30 +278,21 @@
  dcmtk
  nifti-bin
  aeskulap
- fslview
  via-bin
  gwyddion
  sofa-apps
  python-mvpa
- python-nipy
  python-nipype
  caret
  libgdcm-tools
- slicer
- lipsia
  dicom3tools
- odin
  dicomscope
  pixelmed-java
- gofigure2
- ginkgocadx
  mricron
  voxbo
  mrtrix
  ants
- itksnap
  mriconvert
- connectomeviewer
  sigviewer
  openmeeg-tools
  biosig-tools
@@ -334,17 +313,14 @@
  libminc-dev
  libmdc2-dev
  libnifti-dev
- libigstk4-dev
  libinsighttoolkit3-dev
  libvolpack1-dev
  libgdcm2-dev
  python-gdcm
  python-mvpa
- python-nipy
  python-nipype
  python-nitime
  libvia-dev
- odin
  libcv-dev
  libvxl1-dev
  libteem1-dev

Modified: projects/med/trunk/debian-med/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=2901&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control (original)
+++ projects/med/trunk/debian-med/debian/control Mon Jul 18 08:50:09 2011
@@ -7,8 +7,8 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Build-Depends-Indep: blends-dev (>= 0.6.15)
 Standards-Version: 3.9.2
-Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/blends/projects/med/trunk/debian-med/
+Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/
+Vcs-Svn: svn://svn.debian.org/blends/projects/med/trunk/debian-med/
 
 Package: med-tasks
 Architecture: all
@@ -59,8 +59,8 @@
 Package: med-bio
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: abacas, acedb-other, acedb-other-belvu, acedb-other-dotter, adun.app, alien-hunter, altree, amap-align, ampliconnoise, autodock, autodock-vina, autogrid, ballview, bedtools, biomaj, blast2, bowtie, boxshade, bwa, clonalframe, clustalw, clustalx, dialign, dialign-tx, dotur, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastx-toolkit, figtree, gamgi, garlic, gbrowse, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, infernal, jmol, kalign, last-align, loki, mafft, maq, maqview, massxpert, melting, mipe, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-blast+, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, ncoils, njplot, perlprimer, phyml, picard-tools, plasmidomics, plink, poa, populations, primer3, probalign, probcons, proda, pymol, python-cogent, r-bioc-hilbertvis, r-cran-qtl, r-other-bio3d, r-other-mott-happy, rasmol, raster3d, raxml, readseq, rnahybrid, samtools, seq-gen, sibsim4, sigma-align, sim4, squizz, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tm-align, transtermhp, tree-puzzle | tree-ppuzzle, treeviewx, velvet, wise
-Suggests: abyss, act, agdbnet, amos-assembler, amoscmp, apollo, arachne, arb, artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagphenotype, bambus, beads, beast-mcmc, big-blast, bio-mauve, blast+, blixem, btk-core, cactus, caftools, cap3, cd-hit, cdna-db, chado, cinema, circos, clonalorigin, clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust, contralign, coot, copycat, crossbow, cufflinks, cytoscape, das-proserver, dazzle, decipher, denoiser, disulfinder, e-hive, ecell, elph, embassy-phylip, emboss-explorer, emboss-kaptain, ensembl, est-db, estferret, estscan, exalt, excavator, fas, fasta, fasttree, figaro, filo, finex, fluctuate, forester, forge, galaxy, gbioseq, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, gentle, glimmerhmm, gmap, gmv, grogui, haploview, hawkeye, hexamer, hilbertvisgui, igv, jalview, jbrowse, jigsaw, jstreeview, jtreeview, kempbasu, lagan, lamarc, logomat-m, lucy, mage2tab, maker2, martj, maude, mauvealigner, maxd, melting-gui, meme, mesquite, metarep, microbiomeutil, migrate, minimus, mirbase, molekel, molphy, mozilla-biofox, msatfinder, mugsy, mummergpu, murasaki, mview, ngila, obo-edit, oligoarrayaux, omegamap, operondb, pal2nal, paml, partigene, patman, pcma, pdb2pqr, pfaat, pftools, phagefinder, phpphylotree, phylip, phylographer, phylowin, prank, proalign, profit, profnet-bval, prot4est, pyrophosphate-tools, python-orange, python-pynast, python-reaper, qiime, qtlcart, r-ape, r-other-genabel, r-other-valdar-bagphenotype.library, raccoon, ray-denovoassembler, rbs-finder, rdkit, rdp-classifier, recombine, repeatfinder, repeatmasker, reputer, rmblast, roche454ace2caf, rose, rosetta, sap, seaview, seqan-apps, sequenceconverter.app, smalt, snap, soapdenovo, spice, splitstree, sra-sdk, ssaha, strap, tacg, taverna, taxinspector, tetra, tigr-assembler, trace2dbest, tracetuner, treebuilder3d, treeplot, treetime, treevolve, trf, tripal, trnascan-se, twain, uniprime, vcftools, vienna-rna, wgs-assembler, x-tandem-pipeline, zodiac
+Recommends: abacas, acedb-other, acedb-other-belvu, acedb-other-dotter, adun.app, alien-hunter, altree, amap-align, ampliconnoise, autodock, autodock-vina, autogrid, bedtools, biomaj, blast2, bowtie, boxshade, bwa, clonalframe, clustalw, clustalx, dialign, dialign-tx, dotur, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastx-toolkit, figtree, gamgi, garlic, gbrowse, gdpc, gff2aplot, gff2ps, ghemical, glam2, gromacs, hmmer, infernal, jmol, kalign, last-align, loki, mafft, maq, maqview, massxpert, melting, mipe, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-blast+, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, ncoils, njplot, perlprimer, phyml, picard-tools, plasmidomics, plink, poa, populations, primer3, probalign, probcons, proda, pymol, python-cogent, r-bioc-hilbertvis, r-cran-qtl, r-other-bio3d, r-other-mott-happy, rasmol, raster3d, raxml, readseq, rnahybrid, samtools, seq-gen, sibsim4, sigma-align, sim4, squizz, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tm-align, transtermhp, tree-puzzle | tree-ppuzzle, treeviewx, velvet, wise
+Suggests: abyss, act, agdbnet, amos-assembler, amoscmp, apollo, arachne, arb, artemis, asap, augustus, autodocktools, axparafit, axpcoords, bagphenotype, ballview, bambus, beads, beast-mcmc, big-blast, bio-mauve, blast+, blixem, btk-core, cactus, caftools, cap3, cd-hit, cdna-db, chado, cinema, circos, clonalorigin, clustalw-mpi, cluster3, cmap, coalesce, codonw, compclust, contralign, coot, copycat, crossbow, cufflinks, cytoscape, das-proserver, dazzle, decipher, denoiser, disulfinder, e-hive, ecell, elph, embassy-phylip, emboss-explorer, emboss-kaptain, ensembl, est-db, estferret, estscan, exalt, excavator, fas, fasta, fasttree, figaro, filo, finex, fluctuate, forester, forge, galaxy, gbioseq, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, gentle, glimmerhmm, gmap, gmv, grogui, haploview, hawkeye, hexamer, hilbertvisgui, igv, jalview, jbrowse, jigsaw, jstreeview, jtreeview, kempbasu, lagan, lamarc, logomat-m, lucy, mage2tab, maker2, martj, maude, mauvealigner, maxd, melting-gui, meme, mesquite, metarep, microbiomeutil, migrate, minimus, mirbase, molekel, molphy, mozilla-biofox, msatfinder, mugsy, mummergpu, murasaki, mview, ngila, obo-edit, oligoarrayaux, omegamap, operondb, pal2nal, paml, partigene, patman, pcma, pdb2pqr, pfaat, pftools, phagefinder, phpphylotree, phylip, phylographer, phylowin, prank, proalign, profit, profnet-bval, prot4est, pyrophosphate-tools, python-orange, python-pynast, python-reaper, qiime, qtlcart, r-ape, r-other-genabel, r-other-valdar-bagphenotype.library, raccoon, ray-denovoassembler, rbs-finder, rdkit, rdp-classifier, recombine, repeatfinder, repeatmasker, reputer, rmblast, roche454ace2caf, rose, rosetta, sap, seaview, seqan-apps, sequenceconverter.app, smalt, snap, soapdenovo, spice, splitstree, sra-sdk, ssaha, strap, tacg, taverna, taxinspector, tetra, tigr-assembler, trace2dbest, tracetuner, treebuilder3d, treeplot, treetime, treevolve, trf, tripal, trnascan-se, twain, uniprime, vcftools, vienna-rna, wgs-assembler, x-tandem-pipeline, zodiac
 Description: Debian Med micro-biology packages
  This metapackage will install Debian packages related to molecular biology,
  structural biology and bioinformatics for use in life sciences.
@@ -85,19 +85,11 @@
  depend on graphical toolkits and therefore can fit on system images for use
  in cloud computing clusters, where space can be limited.
 
-Package: med-cms
-Architecture: all
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Suggests: zope-zms
-Description: Debian Med content management systems
- Here you can find software that is useful to build a
- content management system for medical care.
-
 Package: med-data
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: freediams, python-hl7
-Suggests: drugref.org
+Recommends: freediams
+Suggests: drugref.org, python-hl7
 Description: Debian Med drug databases
  There is at least one free medical drug database packaged for Debian
  which can be installed using this metapackage.  It is supported by the
@@ -118,8 +110,8 @@
 Package: med-imaging
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: aeskulap, amide, ants, biosig-tools, caret, connectomeviewer, ctn, ctsim, dcmtk, dicom3tools, dicomnifti, dicomscope, fslview, ginkgocadx, gofigure2, gwyddion, imagej, itksnap, libgdcm-tools, lipsia, medcon, minc-tools, mriconvert, mricron, mrtrix, nifti-bin, odin, openmeeg-tools, pixelmed-java, python-dipy, python-mvpa, python-nifti, python-nipy, python-nipype, python-nitime, sigviewer, slicer, sofa-apps, via-bin, voxbo, xmedcon
-Suggests: afni, bioimagesuite, blox, brainvisa, cdmedicpacs, cmtk, conquest-dicom-server, dcm4che, dcm4chee, devide, dicom4j, drjekyll, dti-query, dtitk, ecg2png, eeglab, elastix, fiji, freesurfer, fsl, gimias, imagemagick, imview, insightapplications, invesalius, isis, jemris, jist, kradview, libvista2, loci-bio-formats, maris, mayam, medisnap, mesa-test-tools, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, opendicom.net, openelectrophy, opensourcepacs, openwalnut, piano, plastimatch, pngquant, pyxid, stir, tempo, visit, vmtk, xnat
+Recommends: aeskulap, amide, ants, biosig-tools, caret, ctn, ctsim, dcmtk, dicom3tools, dicomnifti, dicomscope, gwyddion, imagej, libgdcm-tools, medcon, minc-tools, mriconvert, mricron, mrtrix, nifti-bin, openmeeg-tools, pixelmed-java, python-dipy, python-mvpa, python-nifti, python-nipype, python-nitime, sigviewer, sofa-apps, via-bin, voxbo, xmedcon
+Suggests: afni, bioimagesuite, blox, brainvisa, cdmedicpacs, cmtk, connectomeviewer, conquest-dicom-server, dcm4che, dcm4chee, devide, dicom4j, drjekyll, dti-query, dtitk, ecg2png, eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, ginkgocadx, gofigure2, imagemagick, imview, insightapplications, invesalius, isis, itksnap, jemris, jist, kradview, libvista2, lipsia, loci-bio-formats, maris, mayam, medisnap, mesa-test-tools, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, odin, opendicom.net, openelectrophy, opensourcepacs, openwalnut, piano, plastimatch, pngquant, python-nipy, pyxid, slicer, stir, tempo, visit, vmtk, xnat
 Description: Debian Med imaging packages
  This metapackage will install Debian packages which might be useful in
  medical image processing.
@@ -142,8 +134,8 @@
 Package: med-imaging-dev
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: cimg-dev, ctn-dev, gmic, libbiosig-dev, libcv-dev, libgdcm2-dev, libgdf-dev, libgiftiio-dev, libigstk4-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti-dev, libopenmeeg-dev, libteem1-dev, libvia-dev, libvolpack1-dev, libvxl1-dev, odin, python-cfflib, python-dicom, python-dipy, python-gdcm, python-mvpa, python-nibabel, python-nipy, python-nipype, python-nitime
-Suggests: emokit, igstk-examples, insighttoolkit3-examples, libactiviz.net5.6-cil, libctkcore0-dev, libmni-perllib-perl, libnifti-doc, libvista2-dev, libvtk5.4, python-libavg, pyxnat
+Recommends: cimg-dev, ctn-dev, gmic, libbiosig-dev, libcv-dev, libgdcm2-dev, libgdf-dev, libgiftiio-dev, libinsighttoolkit3-dev, libmdc2-dev, libminc-dev, libnifti-dev, libopenmeeg-dev, libteem1-dev, libvia-dev, libvolpack1-dev, libvxl1-dev, python-cfflib, python-dicom, python-dipy, python-gdcm, python-mvpa, python-nibabel, python-nipype, python-nitime
+Suggests: emokit, igstk-examples, insighttoolkit3-examples, libactiviz.net5.6-cil, libctkcore0-dev, libigstk4-dev, libmni-perllib-perl, libnifti-doc, libvista2-dev, libvtk5.4, odin, python-libavg, python-nipy, pyxnat
 Description: Debian Med packages for medical image development
  This metapackage will install Debian packages which might be useful
  for developing applications for medical image processing.