[Blends-commit] r2837 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Wed Jun  8 07:21:45 2011
New Revision: 2837

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2837
Log:
Added cinema

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2837&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Wed Jun  8 07:21:45 2011
@@ -3769,6 +3769,21 @@
  BEDTools, one can develop sophisticated pipelines that answer complicated
  research questions by streaming several BEDTools together.
 
+Depends: cinema
+License: LGPL
+Language: Java
+Homepage: http://www.bioinf.man.ac.uk/dbbrowser/ALIGN/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/cinema/trunk
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/cinema/trunk/?rev=0&sc=0
+Pkg-Description: multi-sequence alignment editor and viewer.
+ It has been designed to be as extensible as possible. Notes of this
+ extensibility can be found in "EXTENDING_CINEMA", and the
+ "cinema-module" sub-directory.
+ .
+ Cinema currently has limited support for various sequence formats,
+ although its easy to add new ones. A large number of alignments in the
+ appropriate format can be found as part of the align compendium at
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html