[Blends-commit] r2846 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Jun 17 06:48:53 2011
New Revision: 2846

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2846
Log:
Added profnet

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2846&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jun 17 06:48:53 2011
@@ -3766,6 +3766,24 @@
  For a full feature list you might like to visit
  http://code.google.com/p/rdkit/wiki/FeatureOverview
 
+Depends: profnet-bval
+Homepage: http://www.predictprotein.org/
+License: GPL2+
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/profnet/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/profnet/trunk/
+Description: neural network architecture for profbval
+ PredictProtein integrates feature prediction for secondary structure,
+ solvent accessibility, transmembrane helices, globular regions,
+ coiled-coil regions ,structural switch regions, B-values, disorder
+ regions, intra-residue contacts, protein-protein and protein-DNA binding
+ sites, sub-cellular localization, domain boundaries, beta-barrels,
+ cysteine bonds, metal binding sites and disulphide bridges.
+Comment: The source package splits up in more binary packages.  Profnet-bval
+         is only one example of them.  The final tasks file should mention
+         these all once the package is officially included.
+Remark: The profnet homepage contains an image of a complete Debian system.  The Debian Med
+        team tries to support the authors by providing binary packages inside Debian.
+
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html
 Comment: There is a Gentoo page featuring some projects we do not have mentioned here: