[Blends-commit] r2855 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Jun 24 19:10:20 2011
New Revision: 2855

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2855
Log:
Added abyss

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2855&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jun 24 19:10:20 2011
@@ -3784,6 +3784,22 @@
 Remark: The profnet homepage contains an image of a complete Debian system.  The Debian Med
         team tries to support the authors by providing binary packages inside Debian.
 
+Depends: abyss
+Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss
+WNPP: 631534
+Responsible: Shaun Jackman <sjackman at debian.org>
+License: free for academic use
+Pkg-Description: a de novo, parallel, paired-end sequence assembler
+ ABySS is a de novo, parallel, paired-end sequence assembler that is
+ designed for short reads. It may be used to assemble genome or
+ transcriptome sequence data.  Parallelization is achieved using MPI,
+ OpenMP and pthread.
+Published-Title: ABySS: A parallel assembler for short read sequence data
+Published-Authors: Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I
+Published-In: Genome Research
+Published-Year: 2009
+
+
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html
 Comment: There is a Gentoo page featuring some projects we do not have mentioned here: