[Blends-commit] r2695 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Mar  3 13:17:08 2011
New Revision: 2695

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2695
Log:
Added rdp-classifier, updated info about dotur

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2695&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Mar  3 13:17:08 2011
@@ -2279,8 +2279,10 @@
  obtainable from freebsd.org.
 
 Depends: dotur
-Homepage: http://schloss.micro.umass.edu/software/dotur.html
-License: GPL
+Homepage: http://www.plantpath.wisc.edu/fac/joh/DOTUR/
+License: GPL
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dotur/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dotur/trunk/
 Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Pkg-Description: Defining Operational Taxonomic Units and estimating species Richness
@@ -2293,6 +2295,9 @@
  constructs collector's and rarefaction curves for sampling intensity,
  richness estimators, and diversity indices.
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
+ However, the former official homepage of this project
+ http://schloss.micro.umass.edu/software/dotur.html says explicitely:
+ "Please use mothur instead, feel free to contact Pat Schloss for more information."
 
 Depends: estferret
 Homepage: http://legr.liv.ac.uk/EST-ferret/index.htm
@@ -3604,6 +3609,17 @@
  This package was requested by William Spooner <whs at eaglegenomics.com> as
  a competitor to MIRA2 and wgs-assembler.
 
+Depends: rdp-classifier
+Homepage: http://rdp.cme.msu.edu/
+License: GPL-2+
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rdp-classifier/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rdp-classifier/trunk/
+Pkg-Description: taxonomic assignment from next generation sequencing
+ The RDP Classifier is a nave Bayesian classifier that can rapidly and
+ accurately provides taxonomic assignments from domain to genus, with
+ confidence estimates for each assignment.
+
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html