[Blends-commit] r2708 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Wed Mar  9 18:28:59 2011
New Revision: 2708

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2708
Log:
Added SOAPdenovo

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2708&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Wed Mar  9 18:28:59 2011
@@ -3658,6 +3658,17 @@
   * RESOURCES:      Reference 16S sequences and NAST-alignments that
                     the tools above leverage.
 
+Depends: soapdenovo
+Homepage: http://soap.genomics.org.cn/soapdenovo.html
+License: GPL-3
+Pkg-Description: short-read assembly method for human-sized genomes
+ SOAPdenovo is a novel short-read assembly method that can build a de
+ novo draft assembly for the human-sized genomes. The program is
+ specially designed to assemble Illumina GA short reads. It creates new
+ opportunities for building reference sequences and carrying out accurate
+ analyses of unexplored genomes in a cost effective way.
+
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html