[Blends-commit] r2729 - /projects/med/trunk/debian-med/tasks/bio-ngs

[plessy at users.alioth.debian.org]

Author: plessy
Date: Wed Mar 30 13:58:38 2011
New Revision: 2729

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2729
Log:
Bowtie was accepted in Debian.

Modified:
    projects/med/trunk/debian-med/tasks/bio-ngs

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=2729&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Wed Mar 30 13:58:38 2011
@@ -5,6 +5,7 @@
 
 Depends:
 	bwa,
+	bowtie,
 	last-align,
 	maq,
 	picard-tools,
@@ -13,19 +14,6 @@
 	ssake,
 	tabix,
 	velvet
-
-Depends: bowtie
-Homepage: http://bowtie-bio.sourceforge.net/
-WNPP: 604940
-License: Artistic
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk
-X-Category: Sequencing
-Pkg-Description: An ultrafast memory-efficient short read aligner
- Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
- DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
- reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep
- its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB
- for paired-end).
 
 Depends: cufflinks
 Homepage: http://cufflinks.cbcb.umd.edu/