[Blends-commit] r2820 - /projects/med/trunk/debian-med/tasks/bio-dev

[plessy at users.alioth.debian.org]

Author: plessy
Date: Thu May 26 06:38:18 2011
New Revision: 2820

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2820
Log:
Draft packages iranges and biostrings.

Modified:
    projects/med/trunk/debian-med/tasks/bio-dev

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=2820&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Thu May 26 06:38:18 2011
@@ -133,6 +133,26 @@
  for the mailing list bioclipse-announce. The development is best
  followed on the Bioclipse Wiki where we document the progress and
  ideas of the development on a daily basis.
+
+Depends: biostrings
+Vcs-Git: git://git.debian.org/debian-med/r-bioc-biostrings.git
+Homepage: http://www.bioconductor.org/packages/release/bioc/html/Biostrings.html
+Pkg-Description: String objects representing biological sequences, and matching algorithms
+ Memory efficient string containers, string matching algorithms, and other
+ utilities, for fast manipulation of large biological sequences or sets of
+ sequences.
+
+Depends: iranges
+Vcs-Git: git://git.debian.org/git/debian-med/iranges.git
+Homepage: http://www.bioconductor.org/packages/release/bioc/html/IRanges.html
+Pkg-Description: Infrastructure for manipulating intervals on sequences
+ The package provides efficient low-level and highly reusable S4 classes for
+ storing ranges of integers, RLE vectors (Run-Length Encoding), and, more
+ generally, data that can be organized sequentially (formally defined as Vector
+ objects), as well as views on these Vector objects.  Efficient list-like
+ classes are also provided for storing big collections of instances of the basic
+ classes. All classes in the package use consistent naming and share the same
+ rich and consistent "Vector API" as much as possible.
 
 Depends: libgff-perl
 Homepage: http://www.sanger.ac.uk/Software/formats/GFF/