[Blends-commit] r2822 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri May 27 07:58:44 2011
New Revision: 2822

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2822
Log:
Added strap

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2822&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri May 27 07:58:44 2011
@@ -3722,6 +3722,39 @@
  A family of gene prediction programs developed at Georgia Institute of 
  Technology, Atlanta, Georgia, USA.
 
+Depends: strap
+Homepage: http://3d-alignment.eu/
+License: GNU + some external components with different licenses
+Language: Java
+Pkg-Description: Interactive Structure based Sequences Alignment Program
+ STRAP is a comfortable and comprehensive tool to edit multiple protein
+ sequence alignments. A wide range of functions related to protein
+ sequences and protein structures are accessible with an intuitive
+ graphical interface.
+ .
+ STRAP is tightly integrated into your desktop environment supporting
+ cut&paste, word completion and spell check. Drag_and_drop is
+ available for proteins, nucleotide structures and hetero structures.
+ Context menu for proteins, annotations and files are triggered by
+ right mouse click. The program appears to be complicated in the
+ beginning. With the help of the integrated tutorials you will learn how
+ to apply the currently available methods to compare proteins sequences
+ and structures. 
+ .
+ Key features are:
+  * Visualization and manipulation of sequence alignments (up to 1000
+    sequences)
+  * Automatic computation of multiple sequence alignments by Clustalw
+  * Loading protein files from public databases
+  * BLAST searches
+  * Structure prediction
+  * 3D-visualization using either PyMol, Rasmol, VMD, JMol
+  * 3D-superposition of C-alpha atoms
+  * Dot-plots
+  * High quality PDF output by LaTeX/TeXshade
+  * Project safety by included backup system
+  * Translation of nucleotide sequences to amino acid sequences
+  * Residue selections 
 
 
 Comment: Several related R packages are listed at CRAN: