[Blends-commit] r2963 - in /projects/med/trunk/debian-med/tasks: bio bio-ngs oncology statistics

Sun Oct 2 06:12:12 UTC 2011

Author: tille
Date: Sun Oct  2 06:12:10 2011
New Revision: 2963

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2963
Log:
More cleanups of additional information

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-ngs
    projects/med/trunk/debian-med/tasks/oncology
    projects/med/trunk/debian-med/tasks/statistics

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2963&op=diff
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sun Oct  2 06:12:10 2011
@@ -370,6 +370,12 @@
 Depends: seq-gen
 
 Depends: mira-assembler
+Published-Title: Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
+Published-Authors: Chevreux B, Pfisterer T, Drescher B, Driesel AJ, MÃ¼ller WE, Wetter T, Suhai S.
+Published-In: Genome Res. Jun;14(6):1147-59.
+Published-Year: 2004
+Published-doi: 10.1101/gr.1917404
+Published-URL: http://pubmed.org/15140833
 
 Depends: bagphenotype
 Homepage: http://www.unc.edu/~wvaldar/bagphenotype.html

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=2963&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Sun Oct  2 06:12:10 2011
@@ -40,30 +40,12 @@
  transcripts based on how many reads support each one. 
 
 Depends: mira-assembler
-Homepage: http://chevreux.org/projects_mira.html
-Responsible: George Marselis <george at marsel.is>
-WNPP: 435915
-License: GPL
-Vcs-Git: git://git.debian.org/debian-med/mira.git
-Pkg-Description: Whole Genome Shotgun and EST Sequence Assembler
- The mira genome fragment assembler is a specialised assembler for
- sequencing projects classified as 'hard' due to high number of similar
- repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
- specialised on reconstructing pristine mRNA transcripts while
- detecting and classifying single nucleotide polymorphisms (SNP)
- occuring in different variations thereof.
- .
- The assembler is routinely used for such various tasks as mutation
- detection in different cell types, similarity analysis of transcripts
- between organisms, and pristine assembly of sequences from various
- sources for oligo design in clinical microarray experiments.
 Published-Title: Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
 Published-Authors: Chevreux B, Pfisterer T, Drescher B, Driesel AJ, MÃ¼ller WE, Wetter T, Suhai S.
 Published-In: Genome Res. Jun;14(6):1147-59.
 Published-Year: 2004
 Published-doi: 10.1101/gr.1917404
 Published-URL: http://pubmed.org/15140833
-
 
 Depends: ssaha2
 Homepage: http://www.sanger.ac.uk/resources/software/ssaha2/

Modified: projects/med/trunk/debian-med/tasks/oncology
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/oncology?rev=2963&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/oncology (original)
+++ projects/med/trunk/debian-med/tasks/oncology Sun Oct  2 06:12:10 2011
@@ -32,19 +32,3 @@
  radiation therapists, and radiation oncology residents.
 
 Depends: dicompyler
-Homepage: http://code.google.com/p/dicompyler/
-License: BSD
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dicompyler/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dicompyler/trunk/
-Pkg-Description: radiation therapy research platform
- Dicompyler is an extensible, fully open source radiation therapy
- research platform based on the DICOM standard. It also functions as a
- cross-platform DICOM RT viewer.
- .
- Features:
-  * Import CT Images, DICOM RT structure set, RT dose and RT plan files
-  * Extensible plugin system with included plugins:
-     - 2D image viewer with dose and structure overlay
-     - Dose volume histogram viewer with the ability to analyze DVH parameters
-     - DICOM data tree viewer
-     - Patient anonymizer

Modified: projects/med/trunk/debian-med/tasks/statistics
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/statistics?rev=2963&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/statistics (original)
+++ projects/med/trunk/debian-med/tasks/statistics Sun Oct  2 06:12:10 2011
@@ -26,12 +26,3 @@
  closely-packed, non-overlapping points.
 
 Depends: r-cran-pvclust
-Homepage: http://www.is.titech.ac.jp/~shimo/prog/pvclust/
-License: GPL-2+
-Pkg-Description: Hierarchical Clustering with P-Values via Multiscale Bootstrap
- pvclust is a package for assessing the uncertainty in
- hierarchical cluster analysis. It provides AU (approximately
- unbiased) p-values as well as BP (boostrap probability) values
- computed via multiscale bootstrap resampling.
-Vcs-Git: git://git.debian.org/git/debian-med/pvclust.git
-Vcs-Browser: http://git.debian.org/?p=debian-med/pvclust.git


