[Blends-commit] r2950 - in /projects/med/trunk/debian-med/tasks: bio bio-ngs cloud

[plessy at users.alioth.debian.org]

Author: plessy
Date: Sat Sep 10 13:50:18 2011
New Revision: 2950

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2950
Log:
Filo is now in Debian.

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-ngs
    projects/med/trunk/debian-med/tasks/cloud

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2950&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Sep 10 13:50:18 2011
@@ -347,7 +347,7 @@
 
 Depends: staden-io-lib-utils
 
-Depends: samtools, bedtools
+Depends: samtools, bedtools, filo
 
 Depends: r-bioc-hilbertvis
 Published-Authors: Simon Anders
@@ -3702,24 +3702,6 @@
  although its easy to add new ones. A large number of alignments in the
  appropriate format can be found as part of the align compendium at
 
-Depends: filo
-License: GPL-2
-Language: C++
-Homepage: https://github.com/arq5x/filo
-Vcs-Git: git://git.debian.org/git/debian-med/filo.git
-Vcs-Browser: http://git.debian.org/?p=debian-med/filo.git
-Pkg-Description: FILe and stream Operations
- The following tools are available as part of the filo package:
- .
- groupBy is a useful tool that mimics the "groupBy" clause in database
- systems.
- .
- shuffle will randomize the order of lines in a file. In other words,
- if you have a sorted file, shuffle will undo the sort.
- .
- stats is a small utility for computing descriptive statistic on a
- given column of a tab-delimited file or stream.
-
 Suggests: rdkit
 Homepage: http://code.google.com/p/rdkit/
 License: BSD

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=2950&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Sat Sep 10 13:50:18 2011
@@ -12,6 +12,7 @@
 	bwa,
 	bowtie,
 	fastx-toolkit,
+	filo,
 	last-align,
 	maq,
 	picard-tools,

Modified: projects/med/trunk/debian-med/tasks/cloud
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/cloud?rev=2950&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/cloud (original)
+++ projects/med/trunk/debian-med/tasks/cloud Sat Sep 10 13:50:18 2011
@@ -68,6 +68,7 @@
 Depends:
 	bedtools,
 	bwa,
+	filo,
 	last-align,
 	maq,
 	picard-tools,