[Blends-commit] r2955 - in /projects/med/trunk/debian-med/tasks: imaging imaging-dev

[tille at users.alioth.debian.org]

Author: tille
Date: Wed Sep 14 06:10:23 2011
New Revision: 2955

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2955
Log:
Added volview, moved libbio-formats-java to imaging-dev

Modified:
    projects/med/trunk/debian-med/tasks/imaging
    projects/med/trunk/debian-med/tasks/imaging-dev

Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=2955&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging (original)
+++ projects/med/trunk/debian-med/tasks/imaging Wed Sep 14 06:10:23 2011
@@ -633,21 +633,6 @@
  The package depends from SIGAR which needs to be packaged first.  This is
  discussed at http://lists.debian.org/debian-med/2010/03/msg00025.html.
 
-Depends: loci-bio-formats
-Homepage: http://www.loci.wisc.edu/software/bio-formats
-License: GPL
-Language: Java
-Pkg-Description: a standalone Java library for reading and writing life sciences image file formats
- Bio-Formats is a standalone Java library for reading and writing life
- sciences image file formats. It is capable of parsing both pixels and
- metadata for a large number of formats, as well as writing to several
- formats.  The software includes a visualisation tool VisBio and it also
- works with ImageJ.
- .
- Currentla Bio-Formats supports 75 formats including the most very
- frequently used in biological and medical research.
-Remark: This library would enhance the package imagej
-
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/MedicalImaging.html
@@ -1163,3 +1148,19 @@
  PySurfer offers both a command-line interface designed to broadly replicate
  Freesurfer’s Tksurfer program as well as a Python library for writing scripts
  to efficiently explore complex datasets.
+
+Depends: volview
+Homepage: http://www.kitware.com/products/volview.html
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/volview/trunk/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/volview/trunk/
+WNPP: 640511
+License: BSD
+Pkg-Description: Advanced volume visualization tool
+ VolView is an intuitive, interactive system for volume visualization that
+ allows researchers to quickly explore and analyze complex 3D medical or
+ scientific data on Windows, Mac and Linux computers. Users can easily load and
+ interactively explore datasets using 2D and 3D display methods and tools. 3D
+ tools include volume rendering, maximum intensity projections, and oblique
+ reformatting. The ability to save an entire visualization session allows users
+ to easily stop and start sessions. Advanced users can perform custom data
+ processing using a simple plug-in API.

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging-dev?rev=2955&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev (original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev Wed Sep 14 06:10:23 2011
@@ -226,3 +226,21 @@
   - Aperio (.svs, .tif)
   - MIRAX (.mrxs)
   - Generic tiled TIFF (.tif)
+
+Depends: libbio-formats-java
+Homepage: http://www.loci.wisc.edu/software/bio-formats
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bio-formats/trunk/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bio-formats/trunk/
+License: GPLv3
+Language: Java
+Pkg-Description: a standalone Java library for reading and writing life sciences image file formats
+ Bio-Formats is a standalone Java library for reading and writing life
+ sciences image file formats. It is capable of parsing both pixels and
+ metadata for a large number of formats, as well as writing to several
+ formats.  The software includes a visualisation tool VisBio and it also
+ works with ImageJ.
+ .
+ Currentla Bio-Formats supports 75 formats including the most very
+ frequently used in biological and medical research.
+Remark: This library would enhance the package imagej
+