[Blends-commit] r3251 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Tue Apr  3 11:47:45 2012
New Revision: 3251

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3251
Log:
Removed Publication-* fields now avialable in UDD via debian/upstream files

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3251&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Apr  3 11:47:45 2012
@@ -63,12 +63,6 @@
 Depends: blast2
 
 Depends: mafft
-Published-Title: Multiple alignment of DNA sequences with MAFFT
-Published-Authors: K. Katoh, G. Asimenos, H. Toh
-Published-In: Methods Mol Biol. 537:39-64
-Published-Year: 2009
-Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/19378139
-Published-PubMed: 19378139
 
 Depends: t-coffee
 Published-Title: T-Coffee: A novel method for multiple sequence alignments
@@ -79,19 +73,8 @@
  Version 9.0 contains non-free code.  See http://bugs.debian.org/649263.
 
 Depends: kalign
-Published-Title: Kalign--an accurate and fast multiple sequence alignment algorithm
-Published-Authors: Lassmann T, Sonnhammer EL.
-Published-In: BMC Bioinformatics, 6:298
-Published-Year: 2005
-Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16343337
-Published-PubMed: 16343337
 
 Depends: hmmer
-Published-Title: Multiple Alignment Using Hidden Markov Models.
-Published-Authors: S. R. Eddy.
-Published-In: Proc. Third Int. Conf. Intelligent Systems for Molecular Biology, 114-120.
-Published-Year: 1995
-Published-URL: ftp://selab.janelia.org/pub/publications/Eddy95b/Eddy95b-preprint.pdf
 
 Depends: exonerate
 
@@ -145,8 +128,6 @@
 X-Begin-Category: Analysis of RNA sequences.
 
 Depends: infernal
-Published-In: Bioinformatics 15;25(10):1335-7
-Published-URL: http://bioinformatics.oxfordjournals.org/cgi/content/full/25/10/1335
 
 Depends: rnahybrid
 Published-Authors: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich
@@ -290,8 +271,6 @@
 
 Depends: gmap
 Published-Authors: Thomas D. Wu, Colin K. Watanabe
-Published-In: Bioinformatics
-Published-URL: http://bioinformatics.oupjournals.org/cgi/content/full/21/9/1859
 
 Depends: igv