[Blends-commit] r3678 - /projects/med/trunk/debian-med/tasks/bio-dev

[tille at users.alioth.debian.org]

Author: tille
Date: Wed Dec 19 07:32:17 2012
New Revision: 3678

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3678
Log:
There is actual packaging available for pysam but under the name python-pysam

Modified:
    projects/med/trunk/debian-med/tasks/bio-dev

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3678&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Wed Dec 19 07:32:17 2012
@@ -188,13 +188,7 @@
  input sequence, and this data can be stored externally (i.e. on disk) to
  further reduce memory requirements.
 
-Depends: pysam
-Homepage: http://code.google.com/p/pysam/
-Vcs-Git: git://git.debian.org/debian-med/pysam.git
-Vcs-Browser: http://git.debian.org/?p=debian-med/pysam.git
-Pkg-Description: interface for the SAM/BAM sequence alignment and mapping format
- Pysam is a python module for reading and manipulating Samfiles. It's a
- lightweight wrapper of the samtools C-API.
+Depends: python-pysam
 Remark: Given the large amount of code duplication (samtools, tabix), this package
  may be difficult to accept for Debian.  It is nevertheless listed here as it is a
  useable draft, hoping it may be useful to others.