[Blends-commit] r3151 - in /projects/med/trunk/debian-med/tasks: bio-dev cloud

[tille at users.alioth.debian.org]

Author: tille
Date: Sat Feb 18 19:04:50 2012
New Revision: 3151

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3151
Log:
Seems it needs some time until bagphenotype finally will be packaged so do not leave it without further information in tasks file

Modified:
    projects/med/trunk/debian-med/tasks/bio-dev
    projects/med/trunk/debian-med/tasks/cloud

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3151&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Sat Feb 18 19:04:50 2012
@@ -88,8 +88,9 @@
 
 Depends: libbio-mage-utils-perl
 
+Depends: libchado-perl
+
 Depends: libpal-java
-WNPP: 657633
 
 Depends: libjebl2-java
 Remark: Fork from jebl
@@ -215,22 +216,6 @@
  may be difficult to accept for Debian.  It is nevertheless listed here as it is a
  useable draft, hoping it may be useful to others.
 
-Depends: libchado-perl
-Homepage: http://gmod.org/wiki/Chado
-Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/chado/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/chado/trunk/
-License: Artistic-2.0
-Pkg-Description: database schema and tools for genomic data
- Chado is a relational database schema that underlies many GMOD
- installations. It is capable of representing many of the general
- classes of data frequently encountered in modern biology such as
- sequence, sequence comparisons, phenotypes, genotypes, ontologies,
- publications, and phylogeny. It has been designed to handle complex
- representations of biological knowledge and should be considered one
- of the most sophisticated relational schemas currently available in
- molecular biology. The price of this capability is that the new user
- must spend some time becoming familiar with its fundamentals.
-
 Depends: libgbfp-dev
 Homepage: http://code.google.com/p/gbfp/
 License: GPL

Modified: projects/med/trunk/debian-med/tasks/cloud
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/cloud?rev=3151&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/cloud (original)
+++ projects/med/trunk/debian-med/tasks/cloud Sat Feb 18 19:04:50 2012
@@ -16,13 +16,27 @@
 X-Begin-Category: Genetics
 Depends:
 	alien-hunter,
-	bagphenotype,
 	fastlink,
 	loki,
 	plink,
-	r-other-valdar-bagphenotype.library,
 	r-cran-qtl,
 	r-other-mott-happy
+
+Depends: bagphenotype
+Homepage: http://www.well.ox.ac.uk/~valdar/software/bagphenotype/
+License: GPL-3
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bagphenotype/bagphenotype/trunk/
+Pkg-Description: CLI for the bagphenotype R package
+ mapping QTLs in populations descended from known founders
+
+Depends: r-other-valdar-bagphenotype.library
+Homepage: http://valdarlab.unc.edu/bagphenotype.html
+License: GPL-3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-valdar-bagphenotype/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-other-valdar-bagphenotype/trunk/
+Pkg-Description: GNU R extension of the functionality of happy
+ mapping QTLs in populations descended from known founders
+
 X-End-Category: Genetics
 
 X-Begin-Category: Sequence alignments and related programs.