[Blends-commit] r3164 - in /projects/med/trunk/debian-med/tasks: bio imaging-dev

Sat Feb 25 16:51:09 UTC 2012

Author: tille
Date: Sat Feb 25 16:51:08 2012
New Revision: 3164

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3164
Log:
Removed extra information about just uploaded packages; Updated information about beast-mcmc

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/imaging-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3164&op=diff
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sat Feb 25 16:51:08 2012
@@ -541,6 +541,12 @@
 Depends: jalview
 
 Depends: reprof
+
+Depends: tm-align
+
+Depends: proftmb
+
+X-Mark: Prospective packages are starting here.
 
 Depends: axparafit
 Homepage: http://icwww.epfl.ch/~stamatak/AxParafit.html
@@ -903,8 +909,6 @@
  .
  Ngila is published in Cartwright RA Bioinformatics 2007
  23(11):1427-1428; doi:10.1093/bioinformatics/btm095
-
-Depends: tm-align
 
 Depends: dazzle
 Homepage: http://www.biojava.org/dazzle
@@ -1757,7 +1761,8 @@
 Homepage: http://beast.bio.ed.ac.uk/
 License: LGPL
 WNPP: 552101
-Responsible: Felix Feyertag <felix.feyertag at gmail.com>
+Responsible: Andreas Tille <tille at debian.org>
+Pkg-URL: http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/beast-mcmc/trunk/
 Pkg-Description: Bayesian MCMC analysis of molecular sequences
  BEAST is a cross-platform program for Bayesian MCMC analysis of
@@ -1775,6 +1780,10 @@
 Remark: Name space pollution
  There is a Debian package beast which is completely unrelated
  to this project.
+ .
+ The upload of the package is somehow blocked because the last binary
+ Jar which is included inside the source (mtj.jar) is quite hard to
+ package.  Any help is welcome.
 Published-Title: BEAST: Bayesian evolutionary analysis by sampling trees
 Published-Authors: A. J. Drummond, A. Rambaut
 Published-In: BMC Evolutionary Biology
@@ -3808,22 +3817,6 @@
  the small files. The lookup is currently done with a binary search on an
  array made from the index file.
 
-Depends: proftmb
-Homepage: http://rostlab.org/
-License: GPL-3.0+
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/proftmb/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/proftmb/trunk/
-WNPP: 659964
-Responsible: Laszlo Kajan <lkajan at rostlab.org>
-Pkg-Description: per-residue prediction of bacterial transmembrane beta barrels
- proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative
- bacteria.
- .
- For each query protein, proftmb provides both a Z-value indicating that the
- protein actually contains a membrane barrel, and a four-state per-residue
- labeling of upward- and downward-facing strands, periplasmic hairpins and
- extracellular loops.
-
 Depends: blimps-utils
 Homepage: http://blocks.fhcrc.org/blocks/uploads/blimps
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/blimps/trunk

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging-dev?rev=3164&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev (original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev Sat Feb 25 16:51:08 2012
@@ -279,26 +279,5 @@
 Remark: This library would enhance the package imagej
 
 Suggests: libeegdev-dev
-Homepage: http://cnbi.epfl.ch/software/eegdev.html
-License: LGPL-3+
-Language: C
-WNPP: 656469
-Responsible: Nicolas Bourdaud <nicolas.bourdaud at gmail.com>
-Pkg-Description: biosignal acquisition device library
- eegdev is a library that provides an interface for accessing various EEG
- (and other biosignals) acquisition systems in a unified way. The interface
- has been designed in order to be both flexible and efficient. The device
- specific part is implemented by the means of plugins which makes adding
- new device backend fairly easy even if the library does not support them yet
- officially.
- .
- The core library not only provides a unified and consistent interfaces to
- the eegdev users but it also provides many functionalities to the
- device backends (plugins) ranging from configuration to data casting and
- scaling making writing new device backend an easy task.
- .
- This library is particularly useful to handle the acquisition part of a Brain
- Computer Interface (BCI) or any realtime multi-electrode acquisition in
- neurophysiological research.
 
 Suggests: libxdffileio-dev


