[Blends-commit] r3114 - in /projects/med/trunk/debian-med/tasks: bio bio-dev

[tille at users.alioth.debian.org]

Author: tille
Date: Wed Jan 11 11:01:14 2012
New Revision: 3114

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3114
Log:
Proxy changes made by Laszlo Kajan <lkajan at rostlab.org>

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3114&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Wed Jan 11 11:01:14 2012
@@ -3011,6 +3011,14 @@
 
 Depends: profphd-net, profphd-utils
 
+Depends: profphd
+Published-Title: Combining evolutionary information and neural networks to predict protein secondary structure.
+Published-Authors: Rost, B. and Sander, C.
+Published-In: Proteins. 19(1):55-72
+Published-Year: 1994
+Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/8066087
+Published-PubMed: 8066087
+
 Depends: abyss
 Published-Title: ABySS: A parallel assembler for short read sequence data
 Published-Authors: Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I
@@ -3025,6 +3033,12 @@
 Published-DOI: 12:38doi:10.1186/1471-2105-12-38
 
 Depends: disulfinder
+Published-Title: DISULFIND: a disulfide bonding state and cysteine connectivity prediction server.
+Published-Authors: A. Ceroni and A. Passerini and A. Vullo and P. Frasconi
+Published-In: Nucleic Acids Res. 34:W177-81
+Published-Year: 2006
+Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/16844986
+Published-PubMed: 19378139
 
 Suggests: circos
 
@@ -3869,7 +3883,7 @@
  'reprof' is an improved implementation of 'prof', a popular protein secondary
  structure and accessibility predictor.  Prediction is either
  done from protein sequence alone or from an alignment - the latter should be
-  used for optimal performance.
+ used for optimal performance.
  .
  This package provides the 'reprof' command.  It is only a command line
  interface to the functionality provided by the modules in

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3114&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Wed Jan 11 11:01:14 2012
@@ -70,6 +70,12 @@
 Depends: libsrf-dev
 
 Depends: libzerg-dev, libzerg-perl
+Published-Title: Zerg: a very fast BLAST parser library.
+Published-Authors: Paquola, Apuã C M, Machado, Abimael A, Reis, Eduardo M, Da Silva, Aline M, and Verjovski-Almeida, Sergio
+Published-In: Bioinformatics. 19(8):1035-6
+Published-Year: 2003
+Published-URL: http://www.ncbi.nlm.nih.gov/pubmed/12761068
+Published-PubMed: 12761068
 
 Suggests: r-cran-rocr
 Why: Even if this package is not directly connected to biology it is maintained by