[Blends-commit] r3116 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Jan 20 08:18:10 2012
New Revision: 3116

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3116
Log:
Added grinder

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3116&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jan 20 08:18:10 2012
@@ -3889,6 +3889,26 @@
  interface to the functionality provided by the modules in
  librg-reprof-bundle-perl.
 
+Depends: grinder
+Responsible: Florent Angly <florent.angly at gmail.com>
+Homepage: http://sourceforge.net/projects/biogrinder/
+Vcs-Git: git://git.debian.org/debian-med/grinder.git
+Vcs-Browser: http://git.debian.org/?p=debian-med/grinder.git
+License: GPL-3+
+Pkg-Description: Versatile omics shotgun and amplicon sequencing read simulator
+ Grinder is a versatile program to create random shotgun and amplicon sequence
+ libraries based on DNA, RNA or proteic reference sequences provided in a
+ FASTA file.
+ .
+ Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,
+ proteomic, metaproteomic shotgun and amplicon datasets from current
+ sequencing technologies such as Sanger, 454, Illumina. These simulated
+ datasets can be used to test the accuracy of bioinformatic tools under
+ specific hypothesis, e.g. with or without sequencing errors, or with low or
+ high community diversity. Grinder may also be used to help decide between
+ alternative sequencing methods for a sequence-based project, e.g. should the
+ library be paired-end or not, how many reads should be sequenced.
+
 
 Comment: Several related R packages are listed at CRAN:
          http://cran.r-project.org/web/views/Genetics.html