[Blends-commit] r3489 - in /projects/pan/trunk/debian-pan: config/conf config/config.1 config/control tasks/dataacquisition tasks/dataacquisition-dev tasks/nanoscale-physics tasks/nanoscale-physics-dev tasks/physics tasks/physics-dev tasks/unsorted tasks/viewing
picca at users.alioth.debian.org
picca at users.alioth.debian.org
Sat Jul 14 20:50:01 UTC 2012
Author: picca
Date: Sat Jul 14 20:50:00 2012
New Revision: 3489
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3489
Log:
put everything in only one unsorted task for now
Added:
projects/pan/trunk/debian-pan/tasks/unsorted
Removed:
projects/pan/trunk/debian-pan/tasks/dataacquisition
projects/pan/trunk/debian-pan/tasks/dataacquisition-dev
projects/pan/trunk/debian-pan/tasks/nanoscale-physics
projects/pan/trunk/debian-pan/tasks/nanoscale-physics-dev
projects/pan/trunk/debian-pan/tasks/physics
projects/pan/trunk/debian-pan/tasks/physics-dev
projects/pan/trunk/debian-pan/tasks/viewing
Modified:
projects/pan/trunk/debian-pan/config/conf
projects/pan/trunk/debian-pan/config/config.1
projects/pan/trunk/debian-pan/config/control
Modified: projects/pan/trunk/debian-pan/config/conf
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/config/conf?rev=3489&op=diff
==============================================================================
--- projects/pan/trunk/debian-pan/config/conf (original)
+++ projects/pan/trunk/debian-pan/config/conf Sat Jul 14 20:50:00 2012
@@ -1,4 +1,4 @@
-## This is a configuration file for Debian Science Blend
+## This is a configuration file for PAN Blend
## It is read after /etc/blends/blends.conf and can override or add variables
## This variable is replaced by a debconf question
Modified: projects/pan/trunk/debian-pan/config/config.1
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/config/config.1?rev=3489&op=diff
==============================================================================
--- projects/pan/trunk/debian-pan/config/config.1 (original)
+++ projects/pan/trunk/debian-pan/config/config.1 Sat Jul 14 20:50:00 2012
@@ -8,7 +8,7 @@
.B pan-<metapackage_name>
.SH DESCRIPTION
-Print just a simple information page about every science-* package
+Print just a simple information page about every pan-* package
of the Photon And Neutron Blend. Each metapackage contains a
.I /usr/bin/pan-<metapackage_name>
file which should print some useful information and could be used as auto-apt
Modified: projects/pan/trunk/debian-pan/config/control
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/config/control?rev=3489&op=diff
==============================================================================
--- projects/pan/trunk/debian-pan/config/control (original)
+++ projects/pan/trunk/debian-pan/config/control Sat Jul 14 20:50:00 2012
@@ -5,6 +5,6 @@
This package provides the basic infrastructure of all pan-* packages and is
needed by them.
.
- These are the science related metapackages in the Debian Science project:
+ These are the pan related metapackages in the PAN Blend project:
.
- * pan-soemthing do something # FIXME
+ * pan-something do something # FIXME
Added: projects/pan/trunk/debian-pan/tasks/unsorted
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/unsorted?rev=3489&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/unsorted (added)
+++ projects/pan/trunk/debian-pan/tasks/unsorted Sat Jul 14 20:50:00 2012
@@ -1,0 +1,490 @@
+Task: unsorted
+Description: PAN Debian all packages
+ This metapackage will install all PAN Blend packages. This is
+ a temporary package until we sorted all packages into the right
+ categories.
+
+X-Begin-Category: Synchrotron machine
+
+Suggests: spectra
+Homepage: http://radiant.harima.riken.go.jp/spectra/
+License: ?
+Pkg-Description: calculate optical properties of synchrtron radiation
+ emitted from bending magnets, wigglers.
+
+Comment:
+http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
+
+X-End-Category: Synchrotron machine
+
+X-Begin-Category: Data acquisition
+
+Depends: gpib
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description:gather all information from the user that can be
+provided prior to the tomography experiment.
+
+X-End-Category: Data acquisition
+
+X-Begin-Category: Data Analysis
+
+Suggests: bsl
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/bsl-tar/bsl.tar.gz
+License: ?
+Pkg-Description: small angle scattering
+Comments: binary only
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: cpl
+WNPP: 641628
+Homepage: http://www.eso.org/sci/software/cpl/
+License: GPL2+
+Pkg-Description: ESO Common Pipeline Library
+
+Suggests: dawn
+Homepage: http://www.dawb.org/
+License: ?
+Pkg-Description: general purpose data acquisition and processing
+
+Suggests: diffraction-ring-profiler
+Homepage: http://code.google.com/p/diffraction-ring-profiler/
+License: GPL3+
+Pkg-Description: A program for extracting electron diffraction ring pattern profiles
+
+Suggests: disp
+Homepage: http://code.google.com/p/disp/
+License: GPL2+
+Pkg-Description: Diffraction Image Statistics Package for R
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Depends: python-fabio
+
+Suggests: fit2d
+Homepage: http://www.esrf.eu/computing/scientific/FIT2D/
+License: ?
+Comment: binary only
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+
+Depends: fityk
+
+Suggests: freeart
+Homepage: https://forge.epn-campus.eu/projects/freeart
+License: LGPL
+Pkg-Description: SART reconstruction algorithm
+
+Suggests: fullprof
+Homepage: http://www.ill.eu/sites/fullprof
+License: ?
+Comment: binary only
+
+Depends: g3data
+
+Depends: gnuplot
+
+Suggests: graphlab
+Homepage: http://graphlab.org/
+License: Apache License
+Pkg-Description: A New Parallel Framework for Machine Learning
+
+Depends: guidata, guiqwt
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+
+Suggests: gumtree
+Homepage: http://docs.codehaus.org/display/GUMTREE/Home
+License: ?
+Pkg-Description: general purpose data acq and processing
+
+Suggests: hawk
+Homepage: http://xray.bmc.uu.se/hawk/
+License: ?
+Pkg-Description: diffraction pattern reconstruction
+
+Depends: ifeffit
+
+Depends: imagej
+
+Suggests: imagej-pluggins-tomo
+Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
+License: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: jpowder
+Homepage: http://www.jpowder.org/
+License: GPL3+
+Pkg-Description: Lightweight powder diffraction data visualizer
+
+Depends: kile
+
+Suggests: mantid
+Homepage: http://www.mantidproject.org/Main_Page
+License: ?
+
+Suggests: micromanager
+WNPP: 646853
+
+Suggests: mmdb
+WNPP: 679982
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmdb.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmdb.git
+
+Suggests: mmtk
+WNPP: 642586
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmtk.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
+
+Suggests: nmoldyn
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+
+Depends: nexus
+
+Depends: ngraph-gtk
+
+Depends: objcryst-fox
+
+Depends: octave
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Depends: python-pyfai
+
+Depends: pymca
+
+Suggests: pynx
+Homepage: http://sourceforge.net/apps/mediawiki/pynx/index.php?title=Main_Page
+License: CeCILL-B
+Pkg-Description: Python tools for Nano-structures Crystallography
+
+Suggests: prestopronto
+Homepage: http://code.google.com/p/prestopronto
+License:GPL3+
+Pkg-Description: Software for analysis of Quick Exafs data
+
+Depends: qtiplot
+
+Depends: qtoctave
+
+Suggests: sastbx
+Homepage: http://sastbx.als.lbl.gov/wiki/index.php/Main_Page
+License: ?
+Pkg-Description: Small angle scattering
+
+Depends: scilab
+
+Depends: sixpack
+
+Depends: spd
+
+Depends: spyder
+
+Suggests: thredds
+WNPP: 650261
+
+Suggests: threeb
+Homepage: http://www.coxphysics.com/3b
+License: GPL3+
+Pkg-Description: 3B Microscopy Analysis Software
+
+Depends: vistrails
+
+Suggests: xrdua
+Homepage: http://sourceforge.net/projects/xrdua/
+License: GPL3+
+Pkg-Description: X-ray Powder Diffraction
+Comment: test if it works with gdl
+
+Depends: xylib
+
+Depends: xmaxima
+
+Suggests: xotoko
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/xotoko-tar/xotoko.tar.gz
+License: ?
+
+X-End-Category: Data Analysis
+
+X-Begin-Category: PXSoft
+
+Comment: PXSoft from ESRF: mainly non-free software, non redistributable code for protein crystallography. Here the url to the pxsoft at the esrf [[http://www.esrf.eu/UsersAndScience/Experiments/MX/Software/PXSOFT/|pxsoft]] list of all availables package in the pxsoft directory, which one need to be packaged and wich one did not ? Is it possible for the esrf to tell which of thoses software are required ?, maybe there is very old obsolete soft.
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl/|APLx
+License: non-free
+Comment: non-free APL language is it really usefull ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Comment: need ccp4
+
+Suggests: best
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+
+Suggests: biox-xds
+Homepage: ?
+
+Suggests: bobscript
+Homepage: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+
+Suggests: chart
+Homepage: ?
+
+Suggests: chimera
+Homepage: ?
+
+Suggests: chooch
+Homepage: ?
+
+Suggests: clustalw
+Homepage: ?
+
+Suggests: cn2coot
+Homepage: ?
+
+Suggests: cns_refine
+Suggests: cns_solve
+Suggests: coot
+Suggests: crank
+Suggests: crystfel
+Suggests: das
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Suggests: dino
+Suggests: dna
+Suggests: domain-finder
+Suggests: dps2ar
+Suggests: dviewer
+Suggests: dyndom3d
+Suggests: edna
+Suggests: edna2html
+Suggests: elves
+Suggests: epmr
+Suggests: escet
+Suggests: evrouter
+Suggests: fit2d
+Suggests: fobscom
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+
+Suggests: ha_ncs
+Suggests: harker
+Suggests: hbplus
+Suggests: hca
+Suggests: hkl2map
+Suggests: hyss
+
+Depends: imagej
+
+Suggests: imosflm
+Suggests: induced-rad-dam
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+
+Suggests: ispyb-client
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Suggests: lam
+Suggests: laue
+Suggests: liged
+Suggests: ligplot
+Suggests: ligplus
+Suggests: lscale
+Suggests: maid
+Suggests: main
+Suggests: mar345
+Suggests: marutils
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+
+Depends: mgltools
+
+Suggests: mlfsom
+Suggests: molscriptmolscript-2.1.2
+Suggests: mosflm
+Suggests: msi
+Suggests: nuccyl
+Suggests: nucplot
+Suggests: onoono80ono90
+Suggests: pgplot_5.2
+Suggests: phaser
+Suggests: phaser_sad
+Suggests: phases
+Suggests: phenix
+Suggests: pirate
+Suggests: plotmtv
+Suggests: pointless
+
+Depends: povray
+
+Suggests: powder
+Suggests: promotif
+Suggests: pxpy
+
+Depends: pymol
+Depends: python
+
+Suggests: raddose
+
+Depends: rasmol
+Depends: raster3d
+
+Suggests: refmac
+Suggests: replace
+Suggests: ribbons
+Suggests: ringer
+Suggests: rmerge
+Comment: hugins-tools ?
+
+Suggests: rosetta
+Suggests: rtools
+Suggests: saxs
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+
+Suggests: scala_mpi
+Comment: scala packages ?
+
+Suggests: scsh-0.5.2
+Suggests: shakerr
+Suggests: sharp
+Suggests: shelx
+Suggests: sir
+Suggests: sir2002
+Suggests: snb2.2
+Suggests: snow
+Suggests: solvesolve-2.08
+Suggests: stac-stac2
+Suggests: strategy
+Suggests: surfnet
+Suggests: tcltkblt
+Suggests: testcase
+Suggests: test_exec
+Suggests: textal
+Suggests: theseus
+Suggests: tools
+Suggests: tops
+Suggests: usf
+Suggests: viewhkl
+Suggests: wink
+Suggests: workflow-ds
+Suggests: workflow-executor
+Suggests: xds
+Suggests: xiaxia2
+Suggests: xprep
+Suggests: xrec
+Suggests: xtalview
+
+X-End-Category: PXSoft
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