[Blends-commit] r3535 - /projects/pan/trunk/debian-pan/tasks/mx

[picca at users.alioth.debian.org]

Author: picca
Date: Sat Jul 21 07:28:20 2012
New Revision: 3535

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3535
Log:
improve the mx task

Modified:
    projects/pan/trunk/debian-pan/tasks/mx

Modified: projects/pan/trunk/debian-pan/tasks/mx
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/mx?rev=3535&op=diff
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/mx (original)
+++ projects/pan/trunk/debian-pan/tasks/mx Sat Jul 21 07:28:20 2012
@@ -113,6 +113,7 @@
 
 Suggests: albula
 Homepage: http://www.dectris.ch/software_albula.html
+License: ?
 Pkg-Description: Dectris diffraction image viewer and analysis tool
 
 Depends: apbs
@@ -133,26 +134,39 @@
 
 Suggests: autoproc
 Homepage: http://www.globalphasing.com/autoproc
-License: non-free
-Pkg-Description: ?
+License: ?
+Pkg-Description: MX data processing
+Remark: http://www.globalphasing.com/autoproc/licence/index.html ok for non-free ?
+ needed: mosflm, scala, xds, pointless, ccp4, gnuplot
 
 Depends: openbabel
 
 Suggests: balbes
 Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
 License: ?
-Pkg-Description: ?
+Pkg-Description: BALBES is a system for solving protein structures
+ using x-ray crystallographic data. Molecular Replacement(MR) is its
+ core scientific method. BALBES aims to integrate all components,
+ necessary for finding a solution structure by MR, into one system. It
+ consists of a database, scientific programs and a python
+ pipeline. The system is automated so that it needs no user's
+ intervention when running complicated combination of jobs such as
+ model searching, molecular replacement and refinement.
+ .
+ F.Long, A.Vagin, P.Young and G.N.Murshudov "BALBES: a Molecular Replacement Pipeline " Acta Cryst. D64 125-132(2008) 
 Remark: need ccp4
 
 Suggests: best
-Homepage: ?
-License: ?
-Pkg-Description: ?
+Homepage: http://www.embl-hamburg.de/BEST/
+License: ?
+Registration: http://www.embl-hamburg.de/BEST/download_request3.1.html
+Pkg-Description: optimal planning of X-ray data collection from protein crystals
 
 Suggests: bioxhit
 Homepage: http://www.bioxhit.org
 License: ?
 Pkg-Description: ?
+Remark: Software ?
 
 Suggests: biox-xds
 Homepage: ?
@@ -179,12 +193,30 @@
 Homepage: http://www.cathdb.info
 License: ?
 Remark: used ?
-Pkg-Description: ?
+Pkg-Description: CATH is a manually curated classification of protein
+ domain structures. Each protein has been chopped into structural
+ domains and assigned into homologous superfamilies (groups of domains
+ that are related by evolution). This classification procedure uses a
+ combination of automated and manual techniques which include
+ computational algorithms, empirical and statistical evidence,
+ literature review and expert analysis.
 
 Suggests: ccp4
 Homepage: http://www.ccp4.ac.uk
 License: ?
-Pkg-Description: ?
+Pkg-Description: CCP4 exists to produce and support a world-leading,
+ integrated suite of programs that allows researchers to determine
+ macromolecular structures by X-ray crystallography, and other
+ biophysical techniques. CCP4 aims to develop and support the
+ development of cutting edge approaches to experimental determination
+ and analysis of protein structure, and integrate these approaches
+ into the suite. CCP4 is a community based resource that supports the
+ widest possible researcher community, embracing academic, not for
+ profit, and for profit research. CCP4 aims to play a key role in the
+ education and training of scientists in experimental structural
+ biology. It encourages the wide dissemination of new ideas,
+ techniques and practice.
+Remark: this is a suite of software.
 
 Suggests: cctbx
 WNPP: 679905