[Blends-commit] r3543 - in /projects/med/branch/experimental/debian-med: ./ tasks/
ericmaeker-guest at users.alioth.debian.org
ericmaeker-guest at users.alioth.debian.org
Tue Jul 24 18:26:10 UTC 2012
Author: ericmaeker-guest
Date: Tue Jul 24 18:26:10 2012
New Revision: 3543
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3543
Log:
sync description from desc file to tasks files
Added:
projects/med/branch/experimental/debian-med/tasks/publish
- copied, changed from r3538, projects/med/branch/experimental/debian-med/tasks/typesetting
projects/med/branch/experimental/debian-med/tasks/rx-oncology
- copied, changed from r3538, projects/med/branch/experimental/debian-med/tasks/oncology
Removed:
projects/med/branch/experimental/debian-med/tasks/cms
projects/med/branch/experimental/debian-med/tasks/oncology
projects/med/branch/experimental/debian-med/tasks/typesetting
Modified:
projects/med/branch/experimental/debian-med/debian-med-tasks.desc
projects/med/branch/experimental/debian-med/tasks.ctl
projects/med/branch/experimental/debian-med/tasks/bio
projects/med/branch/experimental/debian-med/tasks/bio-dev
projects/med/branch/experimental/debian-med/tasks/bio-ngs
projects/med/branch/experimental/debian-med/tasks/bio-phylogeny
projects/med/branch/experimental/debian-med/tasks/cloud
projects/med/branch/experimental/debian-med/tasks/data
projects/med/branch/experimental/debian-med/tasks/dental
projects/med/branch/experimental/debian-med/tasks/epi
projects/med/branch/experimental/debian-med/tasks/imaging
projects/med/branch/experimental/debian-med/tasks/imaging-dev
projects/med/branch/experimental/debian-med/tasks/physics
projects/med/branch/experimental/debian-med/tasks/practice
projects/med/branch/experimental/debian-med/tasks/psychology
projects/med/branch/experimental/debian-med/tasks/rehabilitation
projects/med/branch/experimental/debian-med/tasks/statistics
projects/med/branch/experimental/debian-med/tasks/tools
Modified: projects/med/branch/experimental/debian-med/debian-med-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/debian-med-tasks.desc?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/debian-med-tasks.desc (original)
+++ projects/med/branch/experimental/debian-med/debian-med-tasks.desc Tue Jul 24 18:26:10 2012
@@ -253,21 +253,6 @@
raster3d
python-cogent
-## Usefulness ???
-Task: med-cms
-Section: debian-med
-Description: Debian Med content management systems
- This metapackage will install a collection of application and documentation
- related to content management system in health care.
-Relevance: 10
-Packages: list
- spip
- dokuwiki
- wordpress
- drupal
- joomla
- dotclear
-
## Reword this
Task: med-data
Section: debian-med
@@ -427,6 +412,8 @@
Key:
med-rx-oncology
Packages: list
+ uw-prism
+ planunc
dicompyler
Task: med-pharmaco
@@ -446,8 +433,7 @@
Description: Debian Med packages for medical physicists
This metapackage will install a collection of software and
documentation related to medical physicists in radiation
- oncology, diagnostics imaging
- and related fields.
+ oncology, diagnostics imaging and related fields.
Relevance: 10
Key:
med-physics
Modified: projects/med/branch/experimental/debian-med/tasks.ctl
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks.ctl?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks.ctl (original)
+++ projects/med/branch/experimental/debian-med/tasks.ctl Tue Jul 24 18:26:10 2012
@@ -3,7 +3,6 @@
priority-none:bio-ngs
priority-none:bio-phylogeny
priority-med:cloud
-priority-none:cms
priority-high:data
priority-none:dental
priority-high:epi
@@ -11,8 +10,8 @@
priority-high:imaging
priority-high:imaging-dev
priority-none:laboratory
-priority-high:oncology
-priority-high:pharmacy
+priority-high:rx-oncology
+priority-high:pharmaco
priority-high:physics
priority-high:practice
priority-high:psychology
Modified: projects/med/branch/experimental/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/bio?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/bio (original)
+++ projects/med/branch/experimental/debian-med/tasks/bio Tue Jul 24 18:26:10 2012
@@ -1,7 +1,8 @@
Task: Biology
Description: Debian Med micro-biology packages
- This metapackage will install Debian packages related to molecular biology,
- structural biology and bioinformatics for use in life sciences.
+ This metapackage will install a collection of application and documentation
+ related to molecular biology, structural biology and bioinformatics for use
+ in life sciences.
X-Begin-Category: Phylogenetic analysis
Modified: projects/med/branch/experimental/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/bio-dev?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/bio-dev (original)
+++ projects/med/branch/experimental/debian-med/tasks/bio-dev Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Biology Development
Description: Debian Med packages for development of micro-biology applications
- This metapackage will install Debian packages which might be helpful
- for development of applications for micro-biological research.
+ This metapackage will install a collection of application and documentation
+ supporting development of micro-biological research applications.
Depends: bioperl, bioperl-run, libncbi6-dev
Modified: projects/med/branch/experimental/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/bio-ngs?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/bio-ngs (original)
+++ projects/med/branch/experimental/debian-med/tasks/bio-ngs Tue Jul 24 18:26:10 2012
@@ -1,8 +1,8 @@
Task: Next Generation Sequencing
Metapackage: false
Description: Debian Med bioinformatics applications usable in Next Generation Sequencing
- It aims at gettting packages which specializes in alignment of
- sequences produced by next generation sequencing.
+ This metapackage will install a collection of application and documentation which are
+ specialized in alignment of sequences produced by next generation sequencing.
Comment: Do not build a metapackage because it is not clear in how far this set of
packages is complete regarding NGS.
Modified: projects/med/branch/experimental/debian-med/tasks/bio-phylogeny
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/bio-phylogeny?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/bio-phylogeny (original)
+++ projects/med/branch/experimental/debian-med/tasks/bio-phylogeny Tue Jul 24 18:26:10 2012
@@ -1,10 +1,9 @@
Task: Phylogeny
Metapackage: false
Description: Debian Med phylogeny packages
- This lists Debian packages related to phylogeny for use in life sciences.
- The purpose of this compilation of packages is to have a handy subset of
- from the med-bio metapackage which contains a lot more than only phylogeny
- related software.
+ This metapackage will install a collection of application and documentation
+ related to phylogeny for use in life sciences. The objective is to provide additional
+ features specific to phylogeny on the basis of the biology package.
Comment: Do not build a metapackage because it is not clear in how far this set of
packages is complete regarding phylogeny.
Modified: projects/med/branch/experimental/debian-med/tasks/cloud
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/cloud?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/cloud (original)
+++ projects/med/branch/experimental/debian-med/tasks/cloud Tue Jul 24 18:26:10 2012
@@ -1,9 +1,9 @@
Task: Cloud
Description: Debian Med bioinformatics applications usable in cloud computing
- This metapackage will install Debian packages related to molecular biology,
- structural biology and bioinformatics for use in life sciences, that do not
- depend on graphical toolkits and therefore can fit on system images for use
- in cloud computing clusters, where space can be limited.
+ This metapackage will install a collection of application and documentation
+ related to molecular biology, structural biology and bioinformatics for use
+ in life sciences. The selected collection does not depend of any graphical
+ toolkits for a better cloud integration.
X-Begin-Category: Phylogenetic analysis
Depends:
Modified: projects/med/branch/experimental/debian-med/tasks/data
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/data?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/data (original)
+++ projects/med/branch/experimental/debian-med/tasks/data Tue Jul 24 18:26:10 2012
@@ -1,8 +1,7 @@
Task: Medical data
Description: Debian Med drug databases
- This metapackage will install free drug databases and related
- applications. The database can be accessed by any EMR using
- the application.
+ This metapackage will install a collection of application and documentation
+ related to health data standards.
Depends: freediams, freemedforms-freedata
Modified: projects/med/branch/experimental/debian-med/tasks/dental
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/dental?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/dental (original)
+++ projects/med/branch/experimental/debian-med/tasks/dental Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Dental
Description: Debian Med packages related to dental practice
- This metapackage contains dependencies for a collection of software
- which might be helpful for dentists to manage their practice.
+ This metapackage will install a collection of application and documentation
+ related to the dental surgery practice.
Depends: openmolar
Homepage: https://launchpad.net/openmolar
Modified: projects/med/branch/experimental/debian-med/tasks/epi
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/epi?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/epi (original)
+++ projects/med/branch/experimental/debian-med/tasks/epi Tue Jul 24 18:26:10 2012
@@ -1,8 +1,8 @@
Task: Epidemiology
Description: Debian Med epidemiology related packages
- This metapackage will install tools that are useful in epidemiological
- research. Several packages making use of the GNU R data language for
- statistical investigation. It might be a good idea to read the paper
+ This metapackage will install a collection of application and documentation
+ related to epidemiological research. Several packages making use of the GNU R
+ data language for statistical investigation. It might be a good idea to read the paper
"A short introduction to R for Epidemiology" at
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Modified: projects/med/branch/experimental/debian-med/tasks/imaging
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/imaging?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/imaging (original)
+++ projects/med/branch/experimental/debian-med/tasks/imaging Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Imaging
Description: Debian Med imaging packages
- This metapackage will install Debian packages which might be useful in
- medical image processing.
+ This metapackage will install a collection of application and documentation
+ related to medical imaging.
.
It installs several packages supporting DICOM (Digital Imaging and
Communications in Medicine) which is the de-facto standard for medical
@@ -594,7 +594,7 @@
Suggests: connectomeviewer
Published-Authors: Gerhard S, Daducci A, Lemkaddem A, Meuli R, Thiran J-P and Hagmann P
Published-DOI: 10.3389/fninf.2011.00003
-Published-In: Front. Neuroinform. 5:3
+Published-In: Front. Neuroinform. 5:3
Published-Title: The Connectome Viewer Toolkit: An open source framework to manage, analyze, and visualize connectomes
Published-Year: 2011
Modified: projects/med/branch/experimental/debian-med/tasks/imaging-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/imaging-dev?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/imaging-dev (original)
+++ projects/med/branch/experimental/debian-med/tasks/imaging-dev Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Imaging Development
Description: Debian Med packages for medical image development
- This metapackage will install Debian packages which might be useful
- for developing applications for medical image processing.
+ This metapackage will install a collection of application and documentation
+ supporting the development of medical imaging applications.
Depends: ctn-dev, cimg-dev, libminc-dev, libmdc2-dev, libvtk5-dev
Modified: projects/med/branch/experimental/debian-med/tasks/physics
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/physics?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/physics (original)
+++ projects/med/branch/experimental/debian-med/tasks/physics Tue Jul 24 18:26:10 2012
@@ -1,9 +1,8 @@
Task: Physics
Description: Debian Med packages for medical physicists
- This metapackage contains dependencies for a
- collection of software and documentation which is useful for
- medical physicists in radiation oncology, diagnostics imaging
- and related fields.
+ This metapackage will install a collection of software and
+ documentation related to medical physicists in radiation
+ oncology, diagnostics imaging and related fields.
Depends: paw++
Why: Just depend from the user friendly version because it is easier to
Modified: projects/med/branch/experimental/debian-med/tasks/practice
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/practice?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/practice (original)
+++ projects/med/branch/experimental/debian-med/tasks/practice Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Practice
Description: Debian Med packages for practice management
- This metapackage contains dependencies for a collection of software
- which might be helpful for practitioners to manage their practice.
+ This metapackage will install a collection of application and documentation
+ related to the medical practice management.
Depends: gnumed-client
Modified: projects/med/branch/experimental/debian-med/tasks/psychology
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/psychology?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/psychology (original)
+++ projects/med/branch/experimental/debian-med/tasks/psychology Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Psychology
Description: Debian Med packages for psychology
- This metapackage contains dependencies for a collection of software
- which might be helpful for psychological research.
+ This metapackage will install a collection of application and documentation
+ related to psychological research.
Suggests: science-psychophysics
Meta-Suggests: svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
Copied: projects/med/branch/experimental/debian-med/tasks/publish (from r3538, projects/med/branch/experimental/debian-med/tasks/typesetting)
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/publish?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/typesetting (original)
+++ projects/med/branch/experimental/debian-med/tasks/publish Tue Jul 24 18:26:10 2012
@@ -1,8 +1,7 @@
-Task: Typesetting
+Task: Publishing
Description: Debian Med support for typesetting and publishing
- This metapackage will install Debian packages that might be helpful
- for typesetting and publishing in medical care and structural
- biology.
+ This metapackage will install a collection of application and documentation
+ related to health care publishing and structural biology publishing.
Depends: texlive-science
Remark: For biologists specifically biotex.sty and textopo.sty are interesting
Modified: projects/med/branch/experimental/debian-med/tasks/rehabilitation
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/rehabilitation?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/rehabilitation (original)
+++ projects/med/branch/experimental/debian-med/tasks/rehabilitation Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Rehabilitation
Description: Debian Med packages for rehabilitation technologies
- This metapackage will install tools that are useful for
- rehabilitation and therapy.
+ This metapackage will install a collection of application and documentation
+ related to rehabilitation and physical therapy.
Depends: sitplus
Copied: projects/med/branch/experimental/debian-med/tasks/rx-oncology (from r3538, projects/med/branch/experimental/debian-med/tasks/oncology)
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/rx-oncology?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/oncology (original)
+++ projects/med/branch/experimental/debian-med/tasks/rx-oncology Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Oncology
-Description: Debian Med packages for oncology
- This metapackage will install tools that are useful for radiation
- oncology.
+Description: Debian Med packages for radiation oncology
+ This metapackage will install a collection of application and documentation
+ related to radiation oncology.
Depends: uw-prism
Modified: projects/med/branch/experimental/debian-med/tasks/statistics
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/statistics?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/statistics (original)
+++ projects/med/branch/experimental/debian-med/tasks/statistics Tue Jul 24 18:26:10 2012
@@ -1,7 +1,7 @@
Task: Statistics
Description: Debian Med statistics
- This metapackage will install packages which are helpful to do statistics
- with a special focus on tasks in medical care.
+ This metapackage will install a collection of application and documentation
+ related to statistics with a specialization in health care.
Depends: r-bioc-edger, r-bioc-limma
Why: Statistical analysis of transcriptome expression assays.
Modified: projects/med/branch/experimental/debian-med/tasks/tools
URL: http://svn.debian.org/wsvn/blends/projects/med/branch/experimental/debian-med/tasks/tools?rev=3543&op=diff
==============================================================================
--- projects/med/branch/experimental/debian-med/tasks/tools (original)
+++ projects/med/branch/experimental/debian-med/tasks/tools Tue Jul 24 18:26:10 2012
@@ -1,7 +1,8 @@
Task: Tools
Description: Debian Med several tools
- This metapackage will install tools for several purposes in health care.
- Currently it contains some simple programs for Personal Health.
+ This metapackage will install a collection of application and documentation
+ for several purposes in health care. It also contains some simple programs
+ for personal health management.
Depends: pcalendar
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