[Blends-commit] r3401 - /projects/med/trunk/debian-med/tasks/bio

Thu Jun 7 12:13:36 UTC 2012

Author: tille
Date: Thu Jun  7 12:13:36 2012
New Revision: 3401

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3401
Log:
Remove some more now redundant information which is in Vcs

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3401&op=diff
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu Jun  7 12:13:36 2012
@@ -303,6 +303,8 @@
 
 Depends: neobio
 
+Depends: ugene
+
 X-Mark: Prospective packages are starting here.
 
 X-Mark: Packages in Vcs - Information about these is queried from UDD as well
@@ -407,6 +409,18 @@
 Remark: Precondition for T-Coffee
  see http://wiki.debian.org/DebianMed/TCoffee
 
+Depends: sequenceconverter.app
+Remark: Formerly part of Debian as biococoa.app but removed
+ The package was part of Debian under the name biococoa.app which is confusing
+ because biococoa is actually a library for working with sequences under GNUstep.
+ There was an attempt to reupload under the name sequenceconverter.app but
+ ftpmaster did not accepted the package.  The reasons can be read here:
+  http://lists.alioth.debian.org/pipermail/debian-med-packaging/2009-May/003430.html
+ .
+ Version 1.6 is the last upstream version that works with GNUstep.  If
+ newer versions are needed to work under Linux try to convince upstream to
+ support GNUstep.
+
 Depends: strap
 License: GNU + some external components with different licenses
 Language: Java
@@ -429,6 +443,9 @@
 
 Depends: wgs-assembler
 Note: Genome assembly and large-scale genome alignment (http://www.cbcb.umd.edu/software/)
+
+Depends: zodiac-zeden
+Language: C, C++
 
 X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here
 
@@ -2374,20 +2391,6 @@
 Remark: Precondition for T-Coffee
  see http://wiki.debian.org/DebianMed/TCoffee
 
-Depends: zodiac-zeden
-Homepage: http://www.zeden.org/
-License: GPL
-WNPP: 613528
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/zodiac-zeden/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/zodiac-zeden/trunk/
-Language: C, C++
-Responsible: Alex Mestiashvili <alexander.mestiashvili at biotec.tu-dresden.de>
-Pkg-Description: Zeden's Organise DIsplay And Compute
- Zodiac is a molecular modelling suite for computation, analysis and
- display of molecular data. It features state-of-the-art tools for
- managing molecular databases, run molecular docking experiments, compute
- raytraced images and much more.
-
 Depends: beads
 Homepage: http://pappso.inra.fr/bioinfo/beads
 License: CeCILL
@@ -2672,33 +2675,6 @@
  techniques. It can be used through a nice and intuitive user interface
  or, for more advanced users, as a module for Python programming language.
 
-Depends: sequenceconverter.app
-Homepage: http://bioinformatics.org/biococoa/
-License: GPL
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/sequenceconverter/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/sequenceconverter/trunk/
-Pkg-Description: biological sequence file format conversion applet for GNUstep
- Demo application to demonstrate the possibilities of the BioCocoa framework.
- .
- SequenceConverter is a GNUstep applet to convert between sequence file formats.
- The BioCocoa framework provides developers with the opportunity to add
- support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
- Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
- TNT files by writing only three lines of code. The framework is written in
- Cocoa (Objective-C).
-Remark: Formerly part of Debian as biococoa.app but removed
- The package was part of Debian under the name biococoa.app which is confusing
- because biococoa is actually a library for working with sequences under GNUstep.
- There was an attempt to reupload under the name sequenceconverter.app but
- ftpmaster did not accepted the package.  The reasons can be read here:
-  http://lists.alioth.debian.org/pipermail/debian-med-packaging/2009-May/003430.html
- .
- Version 1.6 is the last upstream version that works with GNUstep.  If
- newer versions are needed to work under Linux try to convince upstream to
- support GNUstep.
-
-Depends: ugene
-
 Depends: vegan
 WNPP: 659863
 Homepage: http://vegan.r-forge.r-project.org/


