[Blends-commit] r3421 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Jun 15 13:33:36 2012
New Revision: 3421

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3421
Log:
Remove now redundant extra information

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3421&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jun 15 13:33:36 2012
@@ -345,6 +345,11 @@
 Depends: logomat-m
 
 Depends: mage2tab
+
+Depends: martj
+
+Depends: mauvealigner
+Pkg-URL: http://people.debian.org/~tille/packages/mauvealigner/
 
 Depends: meme
 License: non-free for commercial purpose (http://meme.nbcr.net/meme/COPYRIGHT.html)
@@ -490,17 +495,6 @@
  inter-operable between sites.
 X-Category: Annotation
 
-Depends: martj
-Homepage: http://www.ebi.ac.uk/biomart/
-Responsible: Steffen Moeller <moeller at debian.org>
-License: GPL
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/martj/trunk/
-Pkg-Description: distributed data integration system for biological data
- BioMart is a simple, distributed data integration system with
- powerful query capabilities. The BioMart data model has been applied
- to the following data sources: UniProt Proteomes, Macromolecular
- Structure Database (MSD), Ensembl, Vega, and dbSNP.
-
 Depends: cactus
 Homepage: http://www.cactuscode.org/Community/Biology.html
 License: GPL
@@ -613,39 +607,6 @@
  .
  Note: There are instructions for compiling Mauve from source available at
  http://asap.ahabs.wisc.edu/mauve/mauve-developer-guide/compiling-mauvealigner-from-source.html
-
-Depends: mauvealigner
-Homepage: http://asap.ahabs.wisc.edu/mauve/
-Responsible: Andreas Tille <tille at debian.org>
-License: GPL
-Pkg-URL: http://people.debian.org/~tille/packages/mauvealigner/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mauvealign/trunk/
-Pkg-Description: multiple genome alignment algorithms
- The mauveAligner and progressiveMauve alignment algorithms have been
- implemented as command-line programs included with the downloadable Mauve
- software.  When run from the command-line, these programs provide options
- not yet available in the graphical interface.
- .
- Mauve is a system for efficiently constructing multiple genome alignments
- in the presence of large-scale evolutionary events such as rearrangement
- and inversion. Multiple genome alignment provides a basis for research
- into comparative genomics and the study of evolutionary dynamics.  Aligning
- whole genomes is a fundamentally different problem than aligning short
- sequences.
- .
- Mauve has been developed with the idea that a multiple genome aligner
- should require only modest computational resources. It employs algorithmic
- techniques that scale well in the amount of sequence being aligned. For
- example, a pair of Y. pestis genomes can be aligned in under a minute,
- while a group of 9 divergent Enterobacterial genomes can be aligned in
- a few hours.
- .
- Mauve computes and interactively visualizes genome sequence comparisons.
- Using FastA or GenBank sequence data, Mauve constructs multiple genome
- alignments that identify large-scale rearrangement, gene gain, gene loss,
- indels, and nucleotide substutition.
- .
- Mauve is developed at the University of Wisconsin.
 
 Depends: phylographer
 Homepage: http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html