[Blends-commit] r3426 - in /projects/med/trunk/debian-med/tasks: bio bio-ngs

[tille at users.alioth.debian.org]

Author: tille
Date: Mon Jun 18 09:11:41 2012
New Revision: 3426

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3426
Log:
Remove redundant information about mosaik-aligner from tasks file, add mosaik-aligner to task bio

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-ngs

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3426&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Mon Jun 18 09:11:41 2012
@@ -364,6 +364,8 @@
  are broken and can not be used here - this needs to be fixed first
 
 Depends: molekel
+
+Depends: mosaik-aligner
 
 Depends: mpsqed
 

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=3426&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Mon Jun 18 09:11:41 2012
@@ -34,6 +34,12 @@
 
 Depends: mira-assembler
 
+X-Mark: Prospective packages are starting here.
+ 
+X-Mark: Packages in Vcs - Information about these is queried from UDD as well
+
+Depends: mosaik-aligner
+
 Depends: ssaha2
 Homepage: http://www.sanger.ac.uk/resources/software/ssaha2/
 License: to be clarified
@@ -49,23 +55,6 @@
 Published-Authors: Ning Z, Cox AJ and Mullikin JC
 Published-In: Genome research 2001;11;10;1725-9
 Published-doi: 10.1101/gr.194201
-
-Depends: mosaik-aligner
-Homepage: http://code.google.com/p/mosaik-aligner/
-License: GPL
-Pkg-Description: refrence guided aligner for next-generation sequencing
- MosaikBuild converts various sequence formats into Mosaik’s native
- read format. MosaikAligner pairwise aligns each read to a specified
- series of reference sequences. MosaikSort resolves paired-end reads
- and sorts the alignments by the reference sequence
- coordinates. Finally, MosaikText converts alignments to different
- text-based formats.
- .
- At this time, the workflow consists of supplying sequences in FASTA,
- FASTQ, Illumina Bustard & Gerald, or SRF file formats and producing
- results in the BLAT axt, the BAM/SAM, the UCSC Genome Browser bed, or
- the Illumina ELAND formats.
-
 
 Depends: forge
 Homepage: http://combiol.org/forge/