[Blends-commit] r3343 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Tue May 22 12:34:57 2012
New Revision: 3343

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3343
Log:
Start deleting information from prospective packages in Vcs - this becomes redundant since the machine-readable gatherer is implemented

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3343&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue May 22 12:34:57 2012
@@ -325,6 +325,14 @@
 
 
 X-Mark: Prospective packages are starting here.
+
+X-Mark: Packages in Vcs - Information about these is queried from UDD as well
+
+Depends: agdbnet
+
+Depends: anfo
+
+X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here
 
 Depends: axparafit
 Homepage: http://icwww.epfl.ch/~stamatak/AxParafit.html
@@ -451,29 +459,6 @@
  installations come to pass, ASAP will be further extended to be
  inter-operable between sites.
 X-Category: Annotation
-
-Depends: agdbnet
-Homepage: http://pubmlst.org/software/database/agdbnet/
-Responsible: Andreas Tille <tille at debian.org>
-License: GPL
-WNPP: 500106
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/agdbnet/trunk/
-Pkg-Description: antigen sequence database software for web-based bacterial typing
- AgdbNet is antigen sequence database software for web-based bacterial
- typing. The software facilitates simultaneous BLAST querying of multiple
- loci using either nucleotide or peptide sequences. It's written in Perl
- and runs on Linux/UNIX systems.
- .
- Databases are described by XML files and can have any number of loci, which
- may be defined by nucleotide and/or peptide sequences. The databases can
- optionally have integral isolate tables so that information about representative
- isolates can be retrieved or they may be configured to query external isolate
- databases, such as those hosted on PubMLST.org.
- .
- The software is used on a number of public bacterial typing databases:
-  * Neisseria PorA variable regions | PorB | FetA
-  * Campylobacter flaA
-  * Streptococcus equi seM
 
 Depends: martj
 Homepage: http://www.ebi.ac.uk/biomart/
@@ -3375,19 +3360,6 @@
  .
  The reaper module is used underneath the http://genenetwork.org site.
 
-Depends: anfo
-Homepage: http://bioinf.eva.mpg.de/anfo/
-License: GPLv3
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/anfo/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/anfo/trunk/
-Pkg-Description: Short Read Aligner/Mapper from MPG
- Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes
- more after BLAST/BLAT. It's most useful for the alignment of sequencing reads
- where the DNA sequence is somehow modified (think ancient DNA or bisulphite
- treatment) and/or there is more divergence between sample and reference than
- what fast mappers will handle gracefully (say the reference genome is missing
- and a related species is used instead).
-
 Depends: plato
 Homepage: https://chgr.mc.vanderbilt.edu/plato
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/plato/trunk/