[Blends-commit] r3350 - /projects/med/trunk/debian-med/tasks/bio-phylogeny

[tille at users.alioth.debian.org]

Author: tille
Date: Thu May 24 06:50:54 2012
New Revision: 3350

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3350
Log:
Remove extra information from beast-mcmc also in bio-phylogeny; reordering of packages

Modified:
    projects/med/trunk/debian-med/tasks/bio-phylogeny

Modified: projects/med/trunk/debian-med/tasks/bio-phylogeny
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-phylogeny?rev=3350&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-phylogeny (original)
+++ projects/med/trunk/debian-med/tasks/bio-phylogeny Thu May 24 06:50:54 2012
@@ -121,6 +121,19 @@
  Bioinformatics. 2003 Aug 12;19(12):1505-13.
 
 Depends: tm-align
+
+
+
+Depends: mrbayes
+
+Depends: figtree
+
+Depends: populations
+
+X-Mark: Packages in Vcs - Information about these is queried from UDD as well
+
+Depends: beast-mcmc
+Pkg-URL: http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/
 
 Depends: phylographer
 Homepage: http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html
@@ -183,38 +196,6 @@
 Pkg-Description: draw phylogenetic trees
  PhpPhylotree is a web application that is able to draw phylogenetic trees.
  It produces an SVG (Scalable Vector Graphic) file from phylip/newick tree files.
-
-Depends: beast-mcmc
-Homepage: http://beast.bio.ed.ac.uk/
-License: LGPL
-WNPP: 552101
-Responsible: Felix Feyertag <felix.feyertag at gmail.com>
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/beast-mcmc/trunk/
-Pkg-Description: Bayesian MCMC analysis of molecular sequences
- BEAST is a cross-platform program for Bayesian MCMC analysis of
- molecular sequences.  It is entirely orientated towards rooted,
- time-measured phylogenies inferred using strict or relaxed molecular
- clock models. It can be used as a method of reconstructing
- phylogenies but is also a framework for testing evolutionary
- hypotheses without conditioning on a single tree topology. BEAST uses
- MCMC to average over tree space, so that each tree is weighted
- proportional to its posterior probability. We include a simple to use
- user-interface program for setting up standard analyses and a suit of
- programs for analysing the results.
- .
- The source is avialable at http://code.google.com/p/beast-mcmc/ .
-Published-Title: BEAST: Bayesian evolutionary analysis by sampling trees
-Published-Authors: A. J. Drummond, A. Rambaut
-Published-In: BMC Evolutionary Biology
-Published-URL: http://www.biomedcentral.com/1471-2148/7/214/abstract
-Published-DOI: 10.1186/1471-2148-7-214
-Published-PubMed: 17996036
-
-Depends: mrbayes
-
-Depends: figtree
-
-Depends: populations
 
 Depends: jstreeview
 Homepage: http://www.sanger.ac.uk/Users/lh3/treeview.shtml