[Blends-commit] r3355 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Thu May 24 10:00:26 2012
New Revision: 3355

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3355
Log:
Remove reduncant information from cluster3 and dazzle

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3355&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Thu May 24 10:00:26 2012
@@ -341,6 +341,10 @@
 
 Depends: cinema
 Language: Java
+
+Depends: cluster3
+
+Depends: dazzle
 
 Depends: molekel
 
@@ -462,22 +466,6 @@
  to the following data sources: UniProt Proteomes, Macromolecular
  Structure Database (MSD), Ensembl, Vega, and dbSNP.
 
-Depends: cluster3
-Homepage: http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv
-License: non-free
-WNPP: 286167
-Responsible: Steffen Moeller <moeller at debian.org>
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/cluster3/trunk/
-Pkg-Description: find clustering solutions for genome data
- Cluster 3.0 is an enhanced version of Cluster, which was originally
- developed by Michael Eisen while at Stanford University. The main
- improvement consists of the k-means algorithm, which now includes
- multiple trials to find the best clustering solution. This is crucial
- for the k-means algorithm to be reliable. The routine for self-organizing
- maps was extended to include 2D rectangular geometries. The Euclidean
- distance and the city-block distance were added to the available
- measures of similarity.
-
 Depends: treeview
 Homepage: http://jtreeview.sourceforge.net/
 Responsible: Steffen Moeller <moeller at debian.org>
@@ -621,21 +609,6 @@
  .
  Ngila is published in Cartwright RA Bioinformatics 2007
  23(11):1427-1428; doi:10.1093/bioinformatics/btm095
-
-Depends: dazzle
-Homepage: http://www.biojava.org/dazzle
-Responsible: Steffen Moeller <moeller at debian.org>
-License: LGPL
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/dazzle/trunk/
-Pkg-Description: Java-based DAS server
- Dazzle is a general purpose server for the Distributed Annotation System
- (DAS) protocol. It is implemented as a Java servlet, using the BioJava
- APIs. Dazzle is a modular system which uses small "datasource" plugins to
- provide access to a range of databases. Several general-purpose plugins
- are included in the package, and it it straightforward to develop new
- plugins to connect to your own databases.
- .
- Information on DAS is available from http://www.biodas.org/
 
 Depends: ecell
 Homepage: http://www.e-cell.org/