[Blends-commit] r3367 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Sun May 27 07:33:12 2012
New Revision: 3367

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3367
Log:
Remove now redundant information

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3367&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Sun May 27 07:33:12 2012
@@ -45,6 +45,8 @@
 Depends: mummer
 
 Depends: blast2
+
+Depends: ncbi-blast+
 
 Depends: mafft
 
@@ -346,6 +348,9 @@
 Language: Java
 
 Depends: cluster3
+
+Depends: crossbow
+X-Category: Sequencing
 
 Depends: dazzle
 
@@ -2416,26 +2421,6 @@
 Remark: It seems that wgs-assembler is the more up to date program.  Moreover there
  seems to be no download option for TIGR Assembler at the J. Craig Venter Institute
  (formerly TIGR) any more.
-
-Depends: crossbow
-Homepage: http://bowtie-bio.sourceforge.net/crossbow
-License: Artistic
-X-Category: Sequencing
-Pkg-Description: Genotyping from short reads using cloud computing
- Crossbow is a scalable software pipeline for whole genome resequencing
- analysis. It combines Bowtie, an ultrafast and memory efficient short read
- aligner, and SoapSNP, an accurate genotyper, within Hadoop to distribute and
- accelerate the computation with many nodes. The pipeline can accurately analyze
- over 35x coverage of a human genome in one day on a 10-node local cluster, or
- in 3 hours for about $100 using a 40-node, 320-core cluster rented from
- Amazon's EC2 utility computing service.
-Published-Title: Searching for SNPs with cloud computing
-Published-Authors: Ben Langmead, Michael Schatz, Jimmy Lin, Mihai Pop, Steven Salzberg
-Published-In: Genome Biology
-Published-URL: http://genomebiology.com/2009/10/11/R134
-Published-DOI: 10.1186/gb-2009-10-11-r134
-
-Depends: ncbi-blast+
 
 Depends: treetime
 Homepage: http://treetime.linhi.com/