[Blends-commit] r3372 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Mon May 28 21:15:59 2012
New Revision: 3372

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3372
Log:
Strap was injected into SVN

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3372&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Mon May 28 21:15:59 2012
@@ -399,6 +399,10 @@
 Depends: sap
 Remark: Precondition for T-Coffee
  see http://wiki.debian.org/DebianMed/TCoffee
+
+Depends: strap
+License: GNU + some external components with different licenses
+Language: Java
 
 X-Mark: The information below needs to be checked whether it can be obtained from Vcs or needs to stay here
 
@@ -2890,40 +2894,6 @@
 Pkg-Description: family of gene prediction programs
  A family of gene prediction programs developed at Georgia Institute of
  Technology, Atlanta, Georgia, USA.
-
-Depends: strap
-Homepage: http://3d-alignment.eu/
-License: GNU + some external components with different licenses
-Language: Java
-Pkg-Description: Interactive Structure based Sequences Alignment Program
- STRAP is a comfortable and comprehensive tool to edit multiple protein
- sequence alignments. A wide range of functions related to protein
- sequences and protein structures are accessible with an intuitive
- graphical interface.
- .
- STRAP is tightly integrated into your desktop environment supporting
- cut&paste, word completion and spell check. Drag_and_drop is
- available for proteins, nucleotide structures and hetero structures.
- Context menu for proteins, annotations and files are triggered by
- right mouse click. The program appears to be complicated in the
- beginning. With the help of the integrated tutorials you will learn how
- to apply the currently available methods to compare proteins sequences
- and structures.
- .
- Key features are:
-  * Visualization and manipulation of sequence alignments (up to 1000
-    sequences)
-  * Automatic computation of multiple sequence alignments by Clustalw
-  * Loading protein files from public databases
-  * BLAST searches
-  * Structure prediction
-  * 3D-visualization using either PyMol, Rasmol, VMD, JMol
-  * 3D-superposition of C-alpha atoms
-  * Dot-plots
-  * High quality PDF output by LaTeX/TeXshade
-  * Project safety by included backup system
-  * Translation of nucleotide sequences to amino acid sequences
-  * Residue selections
 
 Suggests: python-rdkit